Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I2 R1
|
772 |
77.0 |
3769570 |
91.6% |
3452926 |
105.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,161,067 |
G→A |
A27V (GCA→GTA) |
ygiQ ← |
Radical SAM superfamily protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,161,067 | 0 | G | A | 100.0%
| 284.4
/ NA
| 86 | A27V (GCA→GTA) | ygiQ | Radical SAM superfamily protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (38/48); total (38/48) |
CCAGCATACGACCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCG > NC_000913/3160936‑3161198
|
ccAGCATACGACCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTcc > 1:1520100/1‑139 (MQ=255)
cGACCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAgg < 1:105014/139‑1 (MQ=255)
cGACCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAgg < 2:841126/139‑1 (MQ=255)
cGACCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAgg < 1:220301/139‑1 (MQ=255)
cGACCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAgg < 1:145905/139‑1 (MQ=255)
aCCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAggcg > 2:1313768/1‑139 (MQ=255)
gCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGcc > 2:1152725/1‑139 (MQ=255)
cAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGccc < 1:677144/139‑1 (MQ=255)
aTCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCg < 2:1220963/139‑1 (MQ=255)
aTCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCg < 2:1305468/139‑1 (MQ=255)
cccGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGc < 1:921569/139‑1 (MQ=255)
gAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGC‑GCCAgg < 1:1313768/139‑1 (MQ=255)
aGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGga > 2:1869834/1‑139 (MQ=255)
ggTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCg > 2:1621690/1‑126 (MQ=255)
ggTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCg < 1:1621690/126‑1 (MQ=255)
ggTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAg > 2:676242/1‑139 (MQ=255)
ggTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAg > 1:800944/1‑139 (MQ=255)
tGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGt < 1:165155/139‑1 (MQ=255)
aTCGACATACGCGTCGCCAGTAACC‑AAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTcgc < 2:1040899/139‑1 (MQ=255)
tCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAAc < 1:1324264/132‑1 (MQ=255)
tCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAAc > 2:1324264/1‑132 (MQ=255)
cGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACt > 1:690574/1‑117 (MQ=255)
cGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACt < 2:690574/117‑1 (MQ=255)
cGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGc > 1:1722285/1‑122 (MQ=255)
cGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGc < 2:1722285/122‑1 (MQ=255)
gACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGa > 1:1800111/1‑139 (MQ=255)
gACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGa < 1:1152725/139‑1 (MQ=255)
tACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCg > 2:1805063/1‑139 (MQ=255)
aCGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCgg < 2:1800111/139‑1 (MQ=255)
aCGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCgg < 2:495282/139‑1 (MQ=255)
cgcgTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGt < 2:782527/139‑1 (MQ=255)
cgTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt < 2:1581068/132‑1 (MQ=255)
cgTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt > 1:1581068/1‑132 (MQ=255)
cgTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTg > 2:217412/1‑139 (MQ=255)
cGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGAt < 1:1805063/139‑1 (MQ=255)
gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAgg > 1:576360/1‑92 (MQ=255)
gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAgg < 2:576360/92‑1 (MQ=255)
gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCgg < 2:242953/132‑1 (MQ=255)
gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCgg > 1:242953/1‑132 (MQ=255)
gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATc > 1:701277/1‑139 (MQ=255)
tAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCgg < 2:1020579/76‑1 (MQ=255)
tAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCgg > 1:1020579/1‑76 (MQ=255)
tAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCACAACAGGCGGCCCAGTACt < 1:1042474/99‑1 (MQ=255)
tAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACt > 2:1042474/1‑99 (MQ=255)
aaTGATGTCGCAGCTATCCCAGTCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACt > 2:485303/1‑92 (MQ=255)
aaTGATGTCGCAGCTATCCCAGTCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACt < 1:485303/92‑1 (MQ=255)
aaTGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCg > 1:556187/1‑95 (MQ=255)
aaTGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCg < 2:556187/95‑1 (MQ=255)
aaTGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATagag < 2:412281/139‑1 (MQ=255)
gTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAtt > 1:107747/1‑139 (MQ=255)
tCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAttt > 2:801228/1‑139 (MQ=255)
cGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAtttt < 1:676242/139‑1 (MQ=255)
cGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAtttt < 2:800944/139‑1 (MQ=255)
gtggATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt < 1:1276777/87‑1 (MQ=255)
gTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt > 2:1276777/1‑90 (MQ=255)
aTCCATCTCTTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATaaaaaaa < 1:110123/139‑1 (MQ=255)
ctctTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGaa < 1:1442757/69‑1 (MQ=255)
ctctTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGaa > 2:1442757/1‑69 (MQ=255)
tctTCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCaa < 2:391797/139‑1 (MQ=255)
tCACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAgg > 2:1332285/1‑139 (MQ=255)
cACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTcg > 2:824579/1‑71 (MQ=255)
cACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTcg < 1:824579/71‑1 (MQ=255)
cACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAGTAATCa > 2:1225207/1‑134 (MQ=255)
cACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCa < 1:1225207/134‑1 (MQ=255)
cACGAGACATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGc < 1:748311/139‑1 (MQ=255)
gagaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTcg < 1:310822/68‑1 (MQ=255)
gagaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTcg > 2:310822/1‑68 (MQ=255)
gagaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAgg > 2:1315603/1‑86 (MQ=255)
gagaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAgg < 1:1315603/86‑1 (MQ=255)
agaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATaaaaaaa < 1:1828475/124‑1 (MQ=255)
agaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATaaaaaaa > 2:1828475/1‑124 (MQ=255)
gaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTc < 2:289972/106‑1 (MQ=255)
gaCATCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTc > 1:289972/1‑106 (MQ=255)
aTCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCgg < 1:1787749/71‑1 (MQ=255)
aTCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCgg > 2:1787749/1‑71 (MQ=255)
aTCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCgg > 2:680350/1‑134 (MQ=255)
aTCGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCgg < 1:680350/134‑1 (MQ=255)
cGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt < 1:923550/65‑1 (MQ=255)
cGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt > 2:923550/1‑65 (MQ=255)
cGGCAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGAGCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATtat > 1:1245034/1‑139 (MQ=255)
cAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt > 2:502931/1‑62 (MQ=255)
cAAAAACGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGAt < 1:502931/62‑1 (MQ=255)
aaaaCGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGcc > 2:920312/1‑139 (MQ=255)
aaaCGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGGTCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCg < 1:1869834/139‑1 (MQ=255)
aaaCGGTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCg < 2:1520100/139‑1 (MQ=255)
ggTACCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATaaaaaaa < 1:510341/108‑1 (MQ=255)
|
CCAGCATACGACCGCAAATCGCCATCCCGAAGCTTGGGTGATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCG > NC_000913/3160936‑3161198
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
