Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,757,183	A→G	C215C (TGT→TGC)	yiaY ←	L‑threonine dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,757,183	0	A	G	100.0%	270.3 / NA	77	C215C (TGT→TGC)	yiaY	L‑threonine dehydrogenase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (36/41); total (36/41)

AACCCAGAGAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCACAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAATCATCAGAGAGGAGTCATTGACAGAAAG  >  NC_000913/3757047‑3757314

aaCCCAGAGAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGcgca                                                                                                                                   >  1:840955/1‑139 (MQ=255)

aaCCCAGAGAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGcgca                                                                                                                                   >  1:966985/1‑139 (MQ=255)

aaCCCAGAGAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGcgca                                                                                                                                   <  1:1565119/139‑1 (MQ=255)

  cccAGAGAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAg                                                                                                                                 <  2:840955/139‑1 (MQ=255)

  cccAGAGAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAg                                                                                                                                 <  2:624263/139‑1 (MQ=255)

     agagAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGt                                                                                                                              <  2:1076692/139‑1 (MQ=255)

       agaAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCa                                                                                                                            >  2:1653551/1‑139 (MQ=255)

          aGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTg                                                                                                                         >  1:1445744/1‑139 (MQ=255)

            cATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGAt                                                                                                                       >  1:1628760/1‑139 (MQ=255)

            cATTATTGAACGCCATACCGGCGAGGAACT‑GGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATc                                                                                                                      >  1:1418665/1‑139 (MQ=255)

                       gCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcgg                                                                                                            <  1:1609547/139‑1 (MQ=255)

                        ccATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcggc                                                                                                           <  2:1445744/139‑1 (MQ=255)

                         cATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcgg                                                                                                            >  2:984319/1‑137 (MQ=255)

                         cATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcgg                                                                                                            <  1:984319/137‑1 (MQ=255)

                         cATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCa                                                                                                          >  2:1456197/1‑139 (MQ=255)

                          aTACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCaa                                                                                                         <  2:408038/139‑1 (MQ=255)

                           tACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAAt                                                                                                        >  1:789926/1‑139 (MQ=255)

                              cGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGa                                                                                                     <  2:1647281/139‑1 (MQ=255)

                                gCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTg                                                                                                                >  2:789339/1‑126 (MQ=255)

                                gCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTg                                                                                                                <  1:789339/126‑1 (MQ=255)

                                  gAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACa                                                                                                 <  2:1007239/139‑1 (MQ=255)

                                   aGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACat                                                                                                >  1:474784/1‑139 (MQ=255)

                                    ggAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACata                                                                                               <  2:648692/139‑1 (MQ=255)

                                       aCTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTgg                                                                                                               >  1:1412704/1‑120 (MQ=255)

                                       aCTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTgg                                                                                                               <  2:1412704/120‑1 (MQ=255)

                                           ggCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGa                                                                                                     <  2:1031143/126‑1 (MQ=255)

                                           ggCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGa                                                                                                     >  1:1031143/1‑126 (MQ=255)

                                               tAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGt                                                                                                                              >  1:362212/1‑97 (MQ=255)

                                               tAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGt                                                                                                                              <  2:362212/97‑1 (MQ=255)

                                                aaGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAgc                                                                                   >  1:1230617/1‑139 (MQ=255)

                                                 aGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAgcg                                                                                  <  1:1870676/139‑1 (MQ=255)

                                                      ttGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAgcgtgcgt                                                                             >  1:1615009/1‑139 (MQ=255)

                                                       tGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGtt                                                                            <  2:789926/139‑1 (MQ=255)

                                                          ttCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAg                                                                         <  2:474784/139‑1 (MQ=255)

                                                              cgcgCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCg                                                                                                                               <  1:1852348/81‑1 (MQ=255)

                                                              cgcgCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCg                                                                                                                               >  2:1852348/1‑81 (MQ=255)

                                                                    ttCGCATTACTGCCATCTCCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACa                                                                                                 >  2:540069/1‑105 (MQ=255)

                                                                    ttCGCATTACTGCCATCTCCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACa                                                                                                 <  1:540069/105‑1 (MQ=255)

                                                                     tCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATAcc                                                              >  2:1771390/1‑139 (MQ=255)

                                                                      cGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATAccc                                                             >  1:1429814/1‑139 (MQ=255)

                                                                             cTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTgcgg                                                      <  2:1615009/139‑1 (MQ=255)

                                                                             cTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTgcgg                                                      <  1:1456197/139‑1 (MQ=255)

                                                                             cTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTgcg                                                       >  1:1443149/1‑138 (MQ=255)

                                                                             cTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTgcg                                                       <  2:1443149/138‑1 (MQ=255)

                                                                               gCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCa                                                                                                          <  2:1376059/85‑1 (MQ=255)

                                                                               gCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCa                                                                                                          >  1:1376059/1‑85 (MQ=255)

                                                                                  aTCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTc                                                 <  2:1486333/139‑1 (MQ=255)

                                                                                    cTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcg                                                                                                             <  2:1600218/77‑1 (MQ=255)

                                                                                    cTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcg                                                                                                             >  1:1600218/1‑77 (MQ=255)

                                                                                        aaCGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGAc                                           >  1:662193/1‑139 (MQ=255)

                                                                                        aaCGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGAc                                           <  1:1653551/139‑1 (MQ=255)

                                                                                               aaCGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcggc                                                                                                           <  1:1724102/68‑1 (MQ=255)

                                                                                               aaCGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTggcggc                                                                                                           >  2:1724102/1‑68 (MQ=255)

                                                                                               aaCGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCa                                    <  1:1771390/139‑1 (MQ=255)

                                                                                                 cGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAg                                                                                                                                 >  2:703990/1‑44 (MQ=255)

                                                                                                 cGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAg                                                                                                                                 <  1:703990/44‑1 (MQ=255)

                                                                                                 cGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATa                                  <  2:1230617/139‑1 (MQ=255)

                                                                                                   gCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATAcc                                <  2:1418665/139‑1 (MQ=255)

                                                                                                      ggTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGcggcgg                                                   >  2:426439/1‑117 (MQ=255)

                                                                                                      ggTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGcggcgg                                                   <  1:426439/117‑1 (MQ=255)

                                                                                                      ggTTTTCGGCAATCATGGTCACGGCTTACAGTTCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCCTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAat                             <  2:245796/139‑1 (MQ=255)

                                                                                                       gTTTTCGGCAATCATGGTCACGGCTTTCAGTGcgca                                                                                                                                   <  1:1778225/36‑1 (MQ=255)

                                                                                                       gTTTTCGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAatc                            >  2:8988/1‑139 (MQ=255)

                                                                                                            cGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTgcgg                                                      >  1:655207/1‑108 (MQ=255)

                                                                                                            cGGCAATCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTgcgg                                                      <  2:655207/108‑1 (MQ=255)

                                                                                                                 aTCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAgc                                                                                   >  2:1345693/1‑74 (MQ=255)

                                                                                                                 aTCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAgc                                                                                   <  1:1345693/74‑1 (MQ=255)

                                                                                                                 aTCATGGTCACGGCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATACGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAATCAGCAGAgagg                  >  2:1114973/1‑139 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACa                                                                                                 >  1:319519/1‑49 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACa                                                                                                 <  2:319519/49‑1 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCaa                              >  2:445237/1‑116 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCaa                              <  1:445237/116‑1 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCa                               <  1:1777346/115‑1 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCa                               >  2:1777346/1‑115 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAATCATCAGAGAGGAGTCATTGACa       >  1:1403882/1‑139 (MQ=255)

                                                                                                                            ggCTTTCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAATCATCAGAGAGGAGTCATTGACa       >  1:604002/1‑139 (MQ=255)

                                                                                                                                 tCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACata                                                                                               <  2:656111/46‑1 (MQ=255)

                                                                                                                                 tCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACata                                                                                               >  1:656111/1‑46 (MQ=255)

                                                                                                                                 tCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAatcat                          >  2:872106/1‑115 (MQ=255)

                                                                                                                                 tCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAatcat                          <  1:872106/115‑1 (MQ=255)

                                                                                                                                 tCAGTGCGCAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAATCATCAGAGAGGAGTCATTGACAGAAag  <  2:1628760/139‑1 (MQ=255)

AACCCAGAGAAGCATTATTGAACGCCATACCGGCGAGGAACTGGGCATAAGCCATTGCTTCACGCGCTTTCGCATTACTGCCATCTTCAACGGCTAACGGCAGGTTTTCGGCAATCATGGTCACGGCTTTCAGTGCACAAGCGTCAGTGATCGGCGTGGCGGCAATAGAAACATATGCTTCGATAGCGTGCGTTAAGGCATCCATACCCGTTGCGGCGGTCAGTGACTTCGGCATACCAATCATCAGAGAGGAGTCATTGACAGAAAG  >  NC_000913/3757047‑3757314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A