Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I2 R1
|
772 |
77.0 |
3769570 |
91.6% |
3452926 |
105.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,908,514 |
A→G |
intergenic (‑148/+35) |
pstB ← / ← pstA |
phosphate ABC transporter ATPase/phosphate ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,908,514 | 0 | A | G | 100.0%
| 242.7
/ NA
| 69 | intergenic (‑148/+35) | pstB/pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/34); total (35/34) |
CTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCC > NC_000913/3908379‑3908628
|
cTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGgggg > 1:1670828/1‑139 (MQ=255)
cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGt > 1:1721394/1‑135 (MQ=255)
cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGt < 2:1721394/135‑1 (MQ=255)
cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAgg > 2:854582/1‑139 (MQ=255)
cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAgg > 2:1466194/1‑139 (MQ=255)
tGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGt > 2:573439/1‑139 (MQ=255)
tGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGt > 1:535877/1‑139 (MQ=255)
gCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGaa > 1:1445037/1‑139 (MQ=255)
ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTCCACGCAGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAAcc > 2:1257501/1‑139 (MQ=255)
tCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCG‑CCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCgt < 2:1735984/139‑1 (MQ=255)
tAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGGAGGGGGTTAGGGTGAGGGGAAAACCgtgt > 2:398134/1‑139 (MQ=255)
aTCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAg < 1:573439/139‑1 (MQ=255)
tCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGc < 1:1466194/139‑1 (MQ=255)
ccGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc < 2:1371024/139‑1 (MQ=255)
ccGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc > 2:1033926/1‑139 (MQ=255)
ccGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc < 2:1445037/139‑1 (MQ=255)
cGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc < 1:398134/139‑1 (MQ=255)
gATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGTAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCATCCGTGTTTAtt < 1:1089404/139‑1 (MQ=255)
aTCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttc < 1:1033926/139‑1 (MQ=255)
aTCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttc > 1:951285/1‑139 (MQ=255)
aTCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttc > 2:993319/1‑139 (MQ=255)
tCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc < 2:1342814/119‑1 (MQ=255)
tCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc > 1:1342814/1‑119 (MQ=255)
cACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGaaaa < 2:1596129/99‑1 (MQ=255)
cACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGaaaa > 1:1596129/1‑99 (MQ=255)
cACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc < 1:369837/118‑1 (MQ=255)
cACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc > 2:369837/1‑118 (MQ=255)
cACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCaaaaa > 2:1250308/1‑139 (MQ=255)
cgcATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGc < 1:810531/104‑1 (MQ=255)
cgcATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGc > 2:810531/1‑104 (MQ=255)
cgcATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAAcg < 2:1670828/139‑1 (MQ=255)
cgcATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAAcg < 1:993319/139‑1 (MQ=255)
cATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAAcgcg > 2:1617748/1‑139 (MQ=255)
aGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCa > 1:846160/1‑90 (MQ=255)
aGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCa < 2:846160/90‑1 (MQ=255)
ttAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGaaaa > 1:820986/1‑78 (MQ=255)
ttAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGaaaa < 2:820986/78‑1 (MQ=255)
tAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCTTTCGTGTTTATTCTTCGCAAAAACAACGAGCGCAAGAATGTTcag < 1:854582/139‑1 (MQ=38)
aaCCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagc < 1:1617748/139‑1 (MQ=255)
aCCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagca < 1:1250308/139‑1 (MQ=255)
gtACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc > 1:799109/1‑89 (MQ=255)
gtACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc < 2:799109/89‑1 (MQ=255)
gtACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagca < 1:1151095/134‑1 (MQ=255)
gtACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagca > 2:1151095/1‑134 (MQ=255)
aCAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTAc < 2:1070148/139‑1 (MQ=255)
agTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCTGAATGTTCAGCAGCAGTACGcac > 1:1752034/1‑139 (MQ=255)
agTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGcac > 1:1683797/1‑139 (MQ=255)
cAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGtt < 2:771841/86‑1 (MQ=255)
cAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGtt > 1:771841/1‑86 (MQ=255)
cAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAgg > 2:1214955/1‑139 (MQ=255)
aaGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTaa < 1:1214955/139‑1 (MQ=255)
gcTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATc > 1:739375/1‑139 (MQ=255)
ggtcggtcCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATa > 2:848795/1‑139 (MQ=255)
cggtcCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATAccc < 1:1257501/139‑1 (MQ=255)
gtcCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCgt > 2:1070118/1‑47 (MQ=255)
gtcCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCgt < 1:1070118/47‑1 (MQ=255)
tcCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCgtgt < 1:1304789/48‑1 (MQ=255)
tcCCCTCGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCgtgt > 2:1304789/1‑48 (MQ=255)
cGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCgtgt > 2:711005/1‑42 (MQ=255)
cGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCgtgt < 1:711005/42‑1 (MQ=255)
cGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc > 1:978935/1‑55 (MQ=255)
cGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc < 2:978935/55‑1 (MQ=255)
cGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCg < 2:1078373/70‑1 (MQ=255)
cGCCCCTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCg > 1:1078373/1‑70 (MQ=255)
ccccTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAaacaac > 2:1697160/1‑78 (MQ=255)
ccccTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAaacaac < 1:1697160/78‑1 (MQ=255)
ccTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAaacaac < 2:410167/76‑1 (MQ=255)
ccTCT‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAaacaac > 1:410167/1‑76 (MQ=255)
tct‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcag < 1:1420503/95‑1 (MQ=255)
tct‑GGGGAGGGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcag > 2:1420503/1‑95 (MQ=255)
|
CTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCT‑GGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCC > NC_000913/3908379‑3908628
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
