Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F1 I2 R1 758 59.3 2864096 93.9% 2689386 105.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,151,425 G→A A187V (GCA→GTA)  exbB ← membrane spanning protein in TonB‑ExbB‑ExbD complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,151,4250GA100.0% 256.9 / NA 79A187V (GCA→GTA) exbBmembrane spanning protein in TonB‑ExbB‑ExbD complex
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/38);  total (41/38)

GCGGCGCTGGCTTCCAGATCCAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTGCCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGTACCAAACAGACCAACGA  >  NC_000913/3151293‑3151560
                                                                                                                                    |                                                                                                                                       
gcggcgCTGGCTTCCAGATCCAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGa                                                                                                                                   >  2:751798/1‑139 (MQ=255)
gcggcgCTGGCTTCCAGATCCAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGa                                                                                                                                   >  1:1129778/1‑139 (MQ=255)
      cTGGCTTCCAGATCCAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGa                                                                                                                             <  2:1425917/139‑1 (MQ=255)
         gCTTCCAGATCCAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTg                                                                                                                          <  2:968079/139‑1 (MQ=255)
         gCTTCCAGATCCAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTg                                                                                                                          <  1:137840/139‑1 (MQ=255)
                   ccAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTg                                                                                                                          >  2:497384/1‑129 (MQ=255)
                   ccAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTg                                                                                                                          <  1:497384/129‑1 (MQ=255)
                            ggCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTc                                                                                                       >  2:1189678/1‑139 (MQ=255)
                            ggCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTc                                                                                                       >  1:341506/1‑139 (MQ=255)
                              cTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTg                                                                                                     >  1:541655/1‑139 (MQ=255)
                                            tACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGC‑TCTGCGATACCCGGCGCaa                                                                                      <  1:1173537/139‑1 (MQ=255)
                                             aCCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCaa                                                                                      >  2:525550/1‑139 (MQ=255)
                                              ccTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAAc                                                                                     <  1:1189678/139‑1 (MQ=255)
                                                 gcgcTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGAc                                                                                  <  2:541655/139‑1 (MQ=255)
                                                 gcgcTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGAc                                                                                  >  1:83541/1‑139 (MQ=255)
                                                   gcTGCAACATCACCCAGCATCGCTTTAAAGCTGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACTAGGCCTATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGgcg                                                                                         <  1:957646/130‑1 (MQ=255)
                                                   gcTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGgcg                                                                                         >  2:957646/1‑130 (MQ=255)
                                                   gcTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTg                                                                                >  1:1006230/1‑139 (MQ=255)
                                                   gcTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCACTACCACGAGGCCGATTGCCGTTGCTAACAGAGc                                                                                                          >  1:723268/1‑113 (MQ=255)
                                                   gcTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCACTACCACGAGGCCGATTGCCGTTGCTAACAGAGc                                                                                                          <  2:723268/113‑1 (MQ=255)
                                                       cAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAg                                                                            >  1:1129422/1‑139 (MQ=255)
                                                       cAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAg                                                                            >  2:906038/1‑139 (MQ=255)
                                                            tCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAg                                                                       >  1:1027127/1‑139 (MQ=255)
                                                            tCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTGATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAg                                                                       <  2:83541/139‑1 (MQ=255)
                                                               cccAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTgg                                                                    >  1:536261/1‑139 (MQ=255)
                                                                       cGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGtt                                                            >  2:101804/1‑139 (MQ=255)
                                                                         cTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACg                                                                                                                                    <  2:1300979/65‑1 (MQ=255)
                                                                         cTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACg                                                                                                                                    >  1:1300979/1‑65 (MQ=255)
                                                                          tttAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTgc                                                         >  2:303232/1‑139 (MQ=255)
                                                                           ttAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTgcg                                                        <  2:1006230/139‑1 (MQ=255)
                                                                                    ccAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGAt                                                    <  2:774301/134‑1 (MQ=255)
                                                                                    ccAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGAt                                                    >  1:774301/1‑134 (MQ=255)
                                                                                        tCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATAc                                                                                               >  2:721777/1‑87 (MQ=255)
                                                                                        tCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATAc                                                                                               <  1:721777/87‑1 (MQ=255)
                                                                                         cTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAg                                          <  2:1027127/139‑1 (MQ=255)
                                                                                               tGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTgcg                                                        <  2:1342742/119‑1 (MQ=255)
                                                                                               tGCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTgcg                                                        >  1:1342742/1‑119 (MQ=255)
                                                                                                gCAAATACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCa                                   <  1:101804/139‑1 (MQ=255)
                                                                                                  aaaTACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCatg                                 <  2:250150/139‑1 (MQ=255)
                                                                                                  aaaTACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCatg                                 <  1:906038/139‑1 (MQ=255)
                                                                                                  aaaTACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCatg                                 <  1:525550/139‑1 (MQ=255)
                                                                                                  aaaTACGTTATAGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCatg                                 <  2:1129422/139‑1 (MQ=255)
                                                                                                      aCGTTATAGATAACGACCGCAGGAATCGCTAACACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGc                             >  1:331622/1‑139 (MQ=255)
                                                                                                          tataGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCa                         >  2:139203/1‑139 (MQ=255)
                                                                                                          tataGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCa                         >  2:1376514/1‑139 (MQ=255)
                                                                                                            taGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGa                       <  1:139203/139‑1 (MQ=255)
                                                                                                            taGATAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGa                       <  2:341506/139‑1 (MQ=255)
                                                                                                                tAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGc                                                                               >  1:1216885/1‑79 (MQ=255)
                                                                                                                tAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGc                                                                               <  2:1216885/79‑1 (MQ=255)
                                                                                                                tAACGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGt                   >  2:1398958/1‑139 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACag                                                                                                             <  2:683405/48‑1 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACag                                                                                                             >  1:683405/1‑48 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGtt                                                                         >  2:764844/1‑84 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGtt                                                                         <  1:764844/84‑1 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGAt                                                    >  1:910738/1‑105 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGAt                                                    <  2:910738/105‑1 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATa                                             <  1:162113/112‑1 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCatg                                 >  2:221088/1‑124 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCatg                                 <  1:221088/124‑1 (MQ=255)
                                                                                                                 aaCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGCCTGCGTTTGCGCGATACCAATa                                             >  2:162113/1‑112 (MQ=255)
                                                                                                                  aCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATAcc                                                                                              <  2:1032866/62‑1 (MQ=255)
                                                                                                                  aCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATAcc                                                                                              >  1:1032866/1‑62 (MQ=255)
                                                                                                                  aCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAg                                          <  2:1071405/114‑1 (MQ=255)
                                                                                                                  aCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAg                                          >  1:1071405/1‑114 (MQ=255)
                                                                                                                  aCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGTAc                 >  1:15707/1‑139 (MQ=255)
                                                                                                                  aCGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGTAc                 >  1:403097/1‑139 (MQ=255)
                                                                                                                   cGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACag                                                                                                             <  1:420853/46‑1 (MQ=255)
                                                                                                                   cGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACag                                                                                                             >  2:420853/1‑46 (MQ=255)
                                                                                                                   cGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCg                                                                                                   >  2:454132/1‑56 (MQ=255)
                                                                                                                   cGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCg                                                                                                   <  1:454132/56‑1 (MQ=255)
                                                                                                                   cGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTgcgc                                                       <  1:1333141/100‑1 (MQ=255)
                                                                                                                   cGACCGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTgcgc                                                       >  2:1333141/1‑100 (MQ=255)
                                                                                                                      ccGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGtt                                                            <  1:105714/92‑1 (MQ=255)
                                                                                                                      ccGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGtt                                                            >  2:105714/1‑92 (MQ=255)
                                                                                                                      ccGCAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGTACCaaa             >  2:539463/1‑139 (MQ=255)
                                                                                                                         cAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAg                                                                       <  2:44129/78‑1 (MQ=255)
                                                                                                                         cAGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAg                                                                       >  1:44129/1‑78 (MQ=255)
                                                                                                                          aGGAATCGCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGTACCAAACAGa         <  1:751798/139‑1 (MQ=255)
                                                                                                                                 gCTACCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGTACCAAACAGACCaacga  <  1:539463/139‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                       
GCGGCGCTGGCTTCCAGATCCAGGTCACGGCTTTGCAGCAACAATACCTGCGCTGCAACATCACCCAGCATCGCTTTAAAGCCGCCAATCTGGCGTGCAAATACGTTATAGATAACGACCGCAGGAATCGCTGCCACGAGGCCGATTGCCGTTGCTAACAGAGCTTCTGCGATACCCGGCGCAACGACTGCCAGGTTAGTGGTCTGCGTTTGCGCGATACCAATAAAGCTGTTCATGATGCCCCAGACCGTACCAAACAGACCAACGA  >  NC_000913/3151293‑3151560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A