Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
748 |
32.0 |
1685426 |
92.6% |
1560704 |
103.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,157,712 |
(C)6→7 |
coding (63/927 nt) |
yqhG → |
DUF3828 family putative periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,157,706 | 1 | . | C | 100.0%
| 107.0
/ NA
| 30 | Q19H (CAG→CAC) | yqhG | DUF3828 family putative periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (14/16); total (14/16) |
ATCATGCAGAGCCGGAAGCTCTTAAAAGAACAACTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAG‑CCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGC > NC_000913/3157573‑3157816
|
atcatGCAGAGCCGGAAGCTCTTAAAAGAACAACTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAG‑ccccc > 1:606549/1‑139 (MQ=255)
agCCGGAAGCTCTTAAAAGAACAACTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGa > 1:215400/1‑139 (MQ=255)
ccGGAAGCTCTTAAAAGAACAACTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGAcc < 2:215400/139‑1 (MQ=255)
ttAAAAGAACAACTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGaacaaa > 2:775990/1‑139 (MQ=255)
aacaacTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCg < 1:775990/139‑1 (MQ=255)
aacaacTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCg > 2:289721/1‑139 (MQ=255)
acaacTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCgg > 2:305901/1‑139 (MQ=255)
caacTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGc < 1:702236/139‑1 (MQ=255)
aacTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAg < 2:716274/103‑1 (MQ=255)
aacTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAg > 1:716274/1‑103 (MQ=255)
tCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGaa < 2:606549/139‑1 (MQ=255)
ccGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCg < 2:670115/123‑1 (MQ=255)
ccGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCg > 1:670115/1‑123 (MQ=255)
gggATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGAcc < 1:455156/104‑1 (MQ=255)
gggATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGAcc > 2:455156/1‑104 (MQ=255)
ggATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACtat > 1:663504/1‑139 (MQ=255)
gATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGaacaaa > 1:389829/1‑112 (MQ=255)
gATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGaacaaa < 2:389829/112‑1 (MQ=255)
aaaCGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAAt > 1:122104/1‑139 (MQ=255)
aaCGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAg > 2:98548/1‑82 (MQ=255)
aaCGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAg < 1:98548/82‑1 (MQ=255)
aaCGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGa < 2:88165/91‑1 (MQ=255)
aaCGGAGAGGTGAAAAACAGATGAAAATAATACCTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGa > 1:88165/1‑91 (MQ=255)
ggAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCa < 2:663504/139‑1 (MQ=255)
agagGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACt < 1:366040/139‑1 (MQ=255)
aaaCAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACATGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAg > 2:319414/1‑109 (MQ=255)
aaaCAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACATGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAg < 1:319414/109‑1 (MQ=255)
gATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAg < 2:581971/104‑1 (MQ=255)
gATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAg > 1:581971/1‑104 (MQ=255)
aTGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAG‑ccccccctca < 2:460501/67‑5 (MQ=255)
aTGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAG‑ccccccctca > 1:460501/1‑63 (MQ=255)
tGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTg < 2:122104/139‑1 (MQ=255)
tttttAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCg > 2:829702/1‑72 (MQ=255)
tttttAGCAGCCCTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCg < 1:829702/72‑1 (MQ=255)
agcagcCCTGGCAAGTTTTACCGTACACGCACAG‑ccc < 1:407590/37‑1 (MQ=255)
agcagcCCTGGCAAGTTTTACCGTACACGCACAG‑ccc > 2:407590/1‑37 (MQ=255)
ccTGGCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCCGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTgc < 1:289721/139‑1 (MQ=255)
gCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCgg > 2:756452/1‑121 (MQ=255)
gCAAGTTTTACCGTACACGCACAGCCCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCgg < 1:756452/121‑1 (MQ=255)
|
ATCATGCAGAGCCGGAAGCTCTTAAAAGAACAACTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGATGAAAATAATACTTCTGTTTTTAGCAGCCCTGGCAAGTTTTACCGTACACGCACAG‑CCCCCCTCACAGACCGTAGAACAAACAGTCCGGCATATTTATCAGAACTATAAATCAGATGCCACTGCCCCTTATTTTGGTGAAACCGGAGAGCGGGCGATAACTTCTGC > NC_000913/3157573‑3157816
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
