Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
781 |
46.9 |
2231650 |
93.5% |
2086592 |
109.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,011,414 |
C→T |
intergenic (+1/‑47) |
hyuA → / → yqeA |
D‑stereospecific phenylhydantoinase/putative amino acid kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,011,414 | 0 | C | T | 100.0%
| 138.0
/ NA
| 43 | intergenic (+1/‑47) | hyuA/yqeA | D‑stereospecific phenylhydantoinase/putative amino acid kinase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/25); total (18/25) |
TACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTAAGAAAATTGTTCTCGCCCTGGGCGGGAATGCGCTGGGCGATGACCTGGCCGGGCAAATGAAA > NC_000913/3011284‑3011529
|
tACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCa < 1:84603/139‑1 (MQ=255)
tACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCa > 1:140671/1‑139 (MQ=255)
tACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCa < 1:942130/139‑1 (MQ=255)
tACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCa < 1:1046068/139‑1 (MQ=255)
aCCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAg > 1:321520/1‑139 (MQ=255)
aCCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGC‑AACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAgg < 2:1112553/139‑1 (MQ=255)
ccTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAgg < 2:321520/139‑1 (MQ=255)
ccTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAgg < 2:392202/139‑1 (MQ=255)
gTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGAt < 2:95033/139‑1 (MQ=255)
tCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGAt > 1:747027/1‑138 (MQ=255)
tCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGAt < 2:747027/138‑1 (MQ=255)
tCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATc > 1:269033/1‑139 (MQ=255)
ggCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGGCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCtata < 1:917610/139‑1 (MQ=255)
gcgcGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATac < 2:194859/139‑1 (MQ=255)
cgcgATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCtata < 2:155282/137‑1 (MQ=255)
cgcgATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCtata > 1:155282/1‑137 (MQ=255)
aTTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCa < 2:130753/123‑1 (MQ=255)
aTTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCa > 1:130753/1‑123 (MQ=255)
tATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCtata < 1:674744/120‑1 (MQ=255)
tATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCATTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCtata > 2:674744/1‑120 (MQ=255)
aTCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGAtgagt < 1:232727/139‑1 (MQ=255)
aTCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGAtgagt < 1:156748/139‑1 (MQ=255)
tggtgAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGAt > 1:373513/1‑108 (MQ=255)
tggtgAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGAt < 2:373513/108‑1 (MQ=255)
aaaCGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATg < 2:269033/139‑1 (MQ=255)
aCGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAg < 2:140671/139‑1 (MQ=255)
tttACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTaa > 1:693444/1‑121 (MQ=255)
tttACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTaa < 2:693444/121‑1 (MQ=255)
aaaGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTAAGAAAATTGTTCTCGCCCTGGGCGGGaa > 1:324588/1‑139 (MQ=255)
aaaGCCGGGCGAGGTCGTTCCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTAAGAAAATTGTTCTCGCCCTGGGCGGGaa > 1:263759/1‑139 (MQ=255)
aaGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAAtgatga < 2:960639/93‑1 (MQ=255)
aaGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAAtgatga > 1:960639/1‑93 (MQ=255)
aGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTAAGAAAATTGTTCTCGCCCTGGGCGGGAATg > 1:167575/1‑139 (MQ=255)
aGCCGAGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAAtgatga > 2:169365/1‑92 (MQ=255)
aGCCGAGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAAtgatga < 1:169365/92‑1 (MQ=255)
gCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAgg < 1:999416/65‑1 (MQ=255)
gCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAgg > 2:999416/1‑65 (MQ=255)
ggCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCAc > 2:185684/1‑54 (MQ=255)
ggCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCAc < 1:185684/54‑1 (MQ=255)
gCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAgg < 1:934922/60‑1 (MQ=255)
gCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAgg > 2:934922/1‑60 (MQ=255)
gCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTAAGAAAATTGTTCTCGCCCTGGGCGGGAATGCGCTgg > 2:168333/1‑139 (MQ=255)
cGTTTGTCCCTCCCGTGCTCTAATCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTAAGAAAATTGTTCTCGCCCTGGGCGGGAATGCGCTGGGCGATGACCTGGCCGGGCAAATGaaa < 2:456292/139‑1 (MQ=255)
|
TACCTGTCAGGGCGCGATTGTCAGAACCTTATCCCGTGGTGAAACGATTTTCTGTGACGGCACCTTTACAGGCAAAGCCGGGCGAGGTCGTTTCCTGCGACGCAAACCGTTTGTCCCTCCCGTGCTCTAACCACTGCCAGGGATCTATACACAATCAAGAATGATGAGTGAGGAAAAATGAGTAAGAAAATTGTTCTCGCCCTGGGCGGGAATGCGCTGGGCGATGACCTGGCCGGGCAAATGAAA > NC_000913/3011284‑3011529
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
