Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
757 |
76.1 |
3598070 |
93.4% |
3360597 |
108.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,082,038 |
T→C |
D42D (GAT→GAC) |
loiP → |
Phe‑Phe periplasmic metalloprotease, OM lipoprotein, low salt‑inducible, Era‑binding heat shock protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,082,038 | 0 | T | C | 100.0%
| 281.3
/ NA
| 77 | D42D (GAT→GAC) | loiP | Phe‑Phe periplasmic metalloprotease, OM lipoprotein, low salt‑inducible, Era‑binding heat shock protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (38/39); total (38/39) |
AAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGCAACAA > NC_000913/3081903‑3082160
|
aaGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGAcgcg > 1:569652/1‑139 (MQ=255)
gagaAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCa < 1:1477469/139‑1 (MQ=255)
aaaaCATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGt > 1:909524/1‑139 (MQ=255)
aTTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGa < 2:1211652/139‑1 (MQ=255)
ttCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAg < 2:358717/139‑1 (MQ=255)
gcgcCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGa < 2:1697023/139‑1 (MQ=255)
tATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGc < 2:909524/139‑1 (MQ=255)
tATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGc < 1:613028/139‑1 (MQ=255)
aaTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGgag > 1:1393433/1‑139 (MQ=255)
aaTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGgag < 2:1621663/139‑1 (MQ=255)
aaTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGgag < 2:1420431/139‑1 (MQ=255)
tGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGgagtg > 1:616806/1‑137 (MQ=255)
tGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGAt > 2:1352117/1‑139 (MQ=255)
tGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACa > 2:1613274/1‑139 (MQ=255)
ggCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGc < 2:1393433/139‑1 (MQ=255)
ggCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGc > 1:1611258/1‑139 (MQ=255)
tgGTTGCCAGAATATGGACTCCAACGGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTgc > 1:1205353/1‑139 (MQ=255)
ggTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTgcgc < 2:277726/139‑1 (MQ=255)
ggTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTgcg > 1:1510332/1‑138 (MQ=255)
ggTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTgcg < 2:1510332/138‑1 (MQ=255)
gTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCAGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgcc > 2:791993/1‑139 (MQ=255)
ttGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGCGTGACGCGCA‑GGTGaa > 1:1047537/1‑84 (MQ=255)
ttGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGaa < 2:1047537/84‑1 (MQ=255)
ttGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGc < 1:838770/126‑1 (MQ=255)
ttGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGc > 2:838770/1‑126 (MQ=255)
ttGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgcca > 2:1775365/1‑139 (MQ=255)
ttGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgcca > 1:925935/1‑139 (MQ=255)
gAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAAt < 2:925935/139‑1 (MQ=255)
tGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAgg < 1:435992/99‑1 (MQ=255)
tGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAgg > 2:435992/1‑99 (MQ=255)
gACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAgg > 2:231893/1‑88 (MQ=255)
caCTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAgg < 1:231893/87‑1 (MQ=255)
aCTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcgacga > 1:334379/1‑117 (MQ=255)
aCTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcgacga < 2:334379/117‑1 (MQ=255)
cAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGc > 2:145256/1‑76 (MQ=255)
cAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGc < 1:145256/76‑1 (MQ=255)
tGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCt > 1:1784654/1‑139 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGa < 1:1206198/68‑1 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcca > 1:40341/1‑115 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcca < 2:40341/115‑1 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGa < 2:1060705/139‑1 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGa < 1:82600/139‑1 (MQ=255)
ctctCATCACGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGa > 2:1206198/1‑68 (MQ=255)
ctcATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACa > 1:1075624/1‑139 (MQ=255)
tcaGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGAc < 1:1065782/134‑1 (MQ=255)
tcaGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGAc > 2:1065782/1‑134 (MQ=255)
caGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTAt < 2:485354/139‑1 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGa > 2:1411585/1‑45 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGa < 1:1411585/45‑1 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACTATTGCGCCAGCCAATAGCGaa > 2:1072648/1‑113 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATa > 2:1657891/1‑115 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATa < 1:1657891/115‑1 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGc > 1:1366098/1‑139 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGc > 1:429047/1‑139 (MQ=255)
gAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAACGCGACGATTGCGCCAGCCAATAGCGaa < 1:1072648/113‑1 (MQ=255)
cGGAAGCTTATCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCaa > 1:1641199/1‑139 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGa > 1:165169/1‑49 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGa < 2:165169/49‑1 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGTCATGTCAGGAGATGGACAGGAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATg > 2:1106647/1‑139 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAgg < 1:265623/67‑1 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAgg > 2:265623/1‑67 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTCAACGTCTGACAACTATTGCCAATg > 2:1001910/1‑139 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATg < 2:1784654/139‑1 (MQ=255)
gAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATg > 1:831035/1‑139 (MQ=255)
aGCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATgcg < 2:1366098/139‑1 (MQ=255)
gCTTTTCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATgcgc < 2:1205353/139‑1 (MQ=255)
ttttCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTa > 2:1586382/1‑139 (MQ=255)
ttttCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTa < 1:791993/139‑1 (MQ=255)
ttCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAgg > 2:80046/1‑139 (MQ=255)
tCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGc < 2:1641199/139‑1 (MQ=255)
tCAGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGc < 2:1611258/139‑1 (MQ=255)
aGGCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGcaa < 1:1001910/139‑1 (MQ=255)
ggCTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGcaac > 1:1002836/1‑139 (MQ=255)
cTTACAGTTTGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGTCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGcaacaa < 1:1106647/139‑1 (MQ=255)
tGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTaaa < 2:33302/95‑1 (MQ=255)
tGAGTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTaaa > 1:33302/1‑95 (MQ=255)
gTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGcaac > 2:682712/1‑125 (MQ=255)
gTGACGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGcaac < 1:682712/125‑1 (MQ=255)
|
AAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAAC‑GGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCA‑GGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTAAACGTCTGACAACTATTGCCAATGCGCTAGGCAACAA > NC_000913/3081903‑3082160
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
