Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	773	79.9	4112934	92.2%	3792125	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,101,039	(C)_7→8	coding (585/720 nt)	yggN ←	DUF2884 family putative periplasmic protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,101,032	1	.	C	93.5%	201.0 / 5.8	62	coding (592/720 nt)	yggN	DUF2884 family putative periplasmic protein
Reads supporting (aligned to +/- strand): ref base . (2/2); new base C (27/31); total (29/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.86e-01

GAGGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACTAATTGCTGGCCTTCGGCG  >  NC_000913/3100899‑3101165

gagGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑c                                                                                                                                  >  2:1955877/1‑139 (MQ=255)

gagGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑c                                                                                                                                  >  1:1394742/1‑139 (MQ=255)

      tattTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑ccccagg                                                                                                                            >  1:421110/1‑135 (MQ=255)

          ttAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTc                                                                                                                         <  1:765071/139‑1 (MQ=255)

                 cccGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGcac                                                                                                                  <  1:1581503/139‑1 (MQ=255)

                  ccGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAGTCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c                                                                                                                                       >  1:1181972/1‑117 (MQ=255)

                  ccGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGcaca                                                                                                                 <  2:1366582/139‑1 (MQ=255)

                  ccGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGcaca                                                                                                                 >  2:635845/1‑139 (MQ=255)

                  ccGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c                                                                                                                                       <  2:1181972/117‑1 (MQ=255)

                   cGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCCCCC‑CCCAGGCTTCCCAGcaca                                                                                                                 >  2:1347569/1‑139 (MQ=255)

                   cGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACAt                                                                                                                <  1:635845/139‑1 (MQ=255)

                    gACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACAtt                                                                                                               <  2:421110/139‑1 (MQ=255)

                          ggCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGc                                                                                                                    <  2:404665/128‑1 (MQ=255)

                          ggCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTaa                                                                                                         >  1:2042398/1‑139 (MQ=255)

                          ggCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTaa                                                                                                         >  1:1287876/1‑139 (MQ=255)

                          ggCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑cc                                                                                                                                 <  2:419945/114‑1 (MQ=255)

                          ggCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑cc                                                                                                                                 >  1:419945/1‑114 (MQ=255)

                          ggCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑CCCCACCCAGGCTTCCCAGc                                                                                                                    >  1:404665/1‑128 (MQ=255)

                               tGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGt                                                                                                    >  2:1580107/1‑139 (MQ=255)

                               tGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGt                                                                                                    >  1:937708/1‑139 (MQ=255)

                                gCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGtt                                                                                                   >  1:1025551/1‑139 (MQ=255)

                                    cTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccg                                                                                               >  2:995154/1‑139 (MQ=255)

                                      aTCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑ccccagg                                                                                                                            >  1:916177/1‑103 (MQ=255)

                                      aTCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑ccccagg                                                                                                                            <  2:916177/107‑5 (MQ=255)

                                      aTCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑cc                                                                                                                                 <  1:224907/102‑1 (MQ=255)

                                      aTCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑cc                                                                                                                                 >  2:224907/1‑102 (MQ=255)

                                         ttCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTccc                                                                                                                       <  1:244577/110‑1 (MQ=255)

                                         ttCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTccc                                                                                                                       >  2:244577/1‑110 (MQ=255)

                                            cAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTc                                                                                      >  1:1065215/1‑139 (MQ=255)

                                                gTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCa                                                                                  <  2:1065215/139‑1 (MQ=255)

                                                 tCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCa                                                                                  >  2:208025/1‑139 (MQ=255)

                                                   acaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAcc                                                                                >  1:1471689/1‑139 (MQ=255)

                                                   acaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAcc                                                                                >  2:1594346/1‑139 (MQ=255)

                                                   acaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAcc                                                                                >  1:381743/1‑139 (MQ=255)

                                                         cgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTc                                                                          >  2:1601031/1‑139 (MQ=255)

                                                            cTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcgcg                                                                       <  2:1025551/139‑1 (MQ=255)

                                                               cAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCa                                                                   <  1:1955877/139‑1 (MQ=255)

                                                                 aaCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  <  2:937708/139‑1 (MQ=255)

                                                                 aaCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  <  1:1580107/139‑1 (MQ=255)

                                                                 aaCATCTTTGCCAAACAGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTTAGCACCGCTTTCGCGCCCAt                                                                  <  2:1394742/139‑1 (MQ=255)

                                                                  aCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCCCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCTCGCCCAt                                                                  <  1:1347569/139‑1 (MQ=255)

                                                                      cTTTGCCAAACTGCTTGAAATTTTTTTCCTCCTTTTTCCACGCGGTTTGGATTCAGGCTTGCAGC‑CCCC‑CCCCGGCTTCCCAGCACATTCTGTAATGGGTTCCCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAt                                                             <  1:953997/139‑1 (MQ=255)

                                                                      cTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAt                                                             <  1:1594346/139‑1 (MQ=255)

                                                                         tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGc                                                                                                                    >  1:834809/1‑81 (MQ=255)

                                                                         tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGc                                                                                                                    <  2:834809/81‑1 (MQ=255)

                                                                         tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTaa                                                          >  1:1441410/1‑139 (MQ=255)

                                                                          gCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCa                                                                                                                      >  2:911081/1‑78 (MQ=255)

                                                                          gCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCa                                                                                                                      <  1:911081/78‑1 (MQ=255)

                                                                          gCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCCCTTTCGCGCCCATTTCATTatt                                                         >  2:953997/1‑137 (MQ=255)

                                                                           ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg                                                        <  2:1287876/139‑1 (MQ=255)

                                                                           ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg                                                        <  2:381743/139‑1 (MQ=255)

                                                                             aaaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCt                                                      <  2:1471689/139‑1 (MQ=255)

                                                                              aaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  >  2:137388/1‑126 (MQ=255)

                                                                              aaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  >  1:332282/1‑126 (MQ=255)

                                                                              aaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  <  1:137388/126‑1 (MQ=255)

                                                                              aaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  <  2:332282/126‑1 (MQ=255)

                                                                                   ctgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑ccccagg                                                                                                                            >  2:174597/1‑58 (MQ=255)

                                                                                   ctgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cccc‑ccccagg                                                                                                                            <  1:174597/62‑5 (MQ=255)

                                                                                     tgAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTa                                              <  1:747309/138‑1 (MQ=255)

                                                                                             ttttCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cc                                                                                                                                      <  1:835643/43‑1 (MQ=255)

                                                                                             ttttCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑cc                                                                                                                                      >  2:835643/1‑43 (MQ=255)

                                                                                                      tttttCCACTCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGcc                             <  1:995154/139‑1 (MQ=255)

                                                                                                               tCGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACt                    <  2:1441410/139‑1 (MQ=255)

                                                                                                                cGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                                                            >  1:536592/1‑66 (MQ=255)

                                                                                                                cGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                                                            <  2:536592/66‑1 (MQ=255)

                                                                                                                cGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg                                                        <  2:854449/102‑1 (MQ=255)

                                                                                                                cGGTTTGGATTGAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg                                                        >  1:854449/1‑102 (MQ=255)

                                                                                                                           gAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAA‑GGGTTACCGCCGCTTTTCAGCACCGCTTTc                                                                          <  1:1403311/72‑1 (MQ=255)

                                                                                                                           gAGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAA‑GGGTTACCGCCGCTTTTCAGCACCGCTTTc                                                                          >  2:1403311/1‑72 (MQ=255)

                                                                                                                            aGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGcc                             >  2:445285/1‑117 (MQ=255)

                                                                                                                            aGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGcc                             <  1:445285/117‑1 (MQ=255)

                                                                                                                            aGGATTGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACTAATTGCTGGCCtt       >  2:232963/1‑139 (MQ=255)

                                                                                                                                 tGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTaa                                                                                                         <  2:182236/36‑1 (MQ=255)

                                                                                                                                 tGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTaa                                                                                                         >  1:182236/1‑36 (MQ=255)

                                                                                                                                 tGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  <  1:446837/75‑1 (MQ=255)

                                                                                                                                 tGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  >  2:446837/1‑75 (MQ=255)

                                                                                                                                 tGCAGC‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACTAATTGCTGGCCTTCGgcg  <  2:2042398/139‑1 (MQ=255)

GAGGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑CCCC‑CCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACTAATTGCTGGCCTTCGGCG  >  NC_000913/3100899‑3101165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A