Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,126,469 |
C→A |
P114P (CCG→CCT) |
priA ← |
primosome factor N' |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,126,469 | 0 | C | A | 100.0%
| 171.8
/ NA
| 49 | P114P (CCG→CCT) | priA | primosome factor N' |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (24/25); total (24/25) |
CTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATCGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCGGATGATG > NC_000913/4126391‑4126546
|
cTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAgg > 1:750564/1‑81 (MQ=255)
gttgttGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGgcg > 1:750552/1‑81 (MQ=255)
ttgttgCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGgcgc > 1:750553/1‑81 (MQ=255)
ttgttgCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGgc < 2:750493/79‑1 (MQ=255)
ttgttgCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGgc < 1:750492/79‑1 (MQ=255)
tgttgCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGcgcg > 2:750555/1‑81 (MQ=255)
gttgCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTTAGTGGCAAACCAGTACCACTTAGGCGCGt > 2:750559/1‑81 (MQ=255)
gCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTc < 1:750494/80‑1 (MQ=255)
gCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTc < 2:750496/80‑1 (MQ=255)
gCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTc < 2:750495/80‑1 (MQ=255)
cTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTcgc < 1:750497/81‑1 (MQ=255)
tGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTcgccg > 1:750549/1‑81 (MQ=255)
tGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTcgccg > 2:750570/1‑81 (MQ=255)
gggggAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTcgccg > 2:750565/1‑80 (MQ=255)
ggAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAgg < 2:750498/81‑1 (MQ=255)
gTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGgccgcc > 1:750539/1‑81 (MQ=255)
gTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGgccgcc < 2:750499/81‑1 (MQ=255)
tttCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGccc < 1:750500/81‑1 (MQ=255)
cAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCt < 1:750501/80‑1 (MQ=255)
cAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTg > 1:750556/1‑81 (MQ=255)
aGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTg < 1:750502/80‑1 (MQ=255)
aGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTg < 2:750503/80‑1 (MQ=255)
ggCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGc > 2:750568/1‑81 (MQ=255)
gCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCg < 1:750505/81‑1 (MQ=255)
gCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCg < 1:750504/81‑1 (MQ=255)
cTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCgt < 2:750506/81‑1 (MQ=255)
ttCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCgtag < 2:750507/80‑1 (MQ=255)
aGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTaa > 2:750560/1‑80 (MQ=255)
aGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTaa > 1:750554/1‑80 (MQ=255)
aTCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAAt > 1:750581/1‑81 (MQ=255)
cACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCgg > 2:750579/1‑81 (MQ=255)
cACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCgg < 1:750509/81‑1 (MQ=255)
cACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCg < 1:750508/80‑1 (MQ=255)
gCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAg > 1:750531/1‑81 (MQ=255)
tGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGaaa > 1:750582/1‑80 (MQ=255)
tGTTCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGaaa > 1:750572/1‑80 (MQ=255)
ttCAGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAg > 1:750563/1‑81 (MQ=255)
aGTGGCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGcac < 2:750510/81‑1 (MQ=255)
gCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATc < 1:750512/80‑1 (MQ=255)
gCAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCg < 2:750511/81‑1 (MQ=255)
cAAACCAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGc < 2:750513/81‑1 (MQ=255)
ccAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAAt > 2:750583/1‑81 (MQ=255)
cAGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATc > 2:750585/1‑81 (MQ=255)
aGTACCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCg < 1:750514/81‑1 (MQ=255)
aCCACATAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCGgat > 2:750575/1‑81 (MQ=255)
acaTAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCGgatgat > 1:750591/1‑81 (MQ=255)
acaTAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCGgatgat > 2:750566/1‑81 (MQ=255)
acaTAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCGgatgat < 1:750515/81‑1 (MQ=255)
caTAGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCGgatgatg < 2:750516/81‑1 (MQ=255)
|
CTGTTGTTGCTTGGGGGAGCGTTTCAGGCTGTTCAGATCCACCGCCTGGCCTTGTTCAGTGGCAAACCAGTACCACATCGGCGCGTTCGCCGCAGGCCGCCCCTGGCGTAGTAAAATCGGCAAGGCATGAAACAGCACATCGCCAATCGGATGATG > NC_000913/4126391‑4126546
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
