Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,316,957 |
Δ1 bp |
coding (262/1137 nt) |
phnM ← |
RPnTP hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,316,956 | 0 | C | . | 100.0%
| 186.1
/ NA
| 41 | coding (263/1137 nt) | phnM | RPnTP hydrolase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (17/24); total (17/24) |
CATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAA > NC_000913/4316877‑4317032
|
catcTTCTCCATATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGcg > 1:791521/1‑80 (MQ=255)
catcTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGcg > 2:791522/1‑80 (MQ=255)
catcTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGcg > 2:791519/1‑80 (MQ=255)
catcTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGcg > 1:791544/1‑80 (MQ=255)
cttctCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGcgctc > 2:791506/1‑77 (MQ=255)
ctcCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCg < 1:791468/79‑1 (MQ=255)
ctcCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGc < 1:791469/80‑1 (MQ=255)
ctcCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGc > 2:791546/1‑80 (MQ=255)
ccAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGccac > 1:791539/1‑81 (MQ=255)
cAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGcc < 1:791470/78‑1 (MQ=255)
gATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCAt < 2:791471/81‑1 (MQ=255)
ttCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCa < 2:791472/81‑1 (MQ=255)
cAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAgcg < 1:791473/79‑1 (MQ=255)
cAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAgc < 1:791474/78‑1 (MQ=255)
aGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGcgt < 2:791475/81‑1 (MQ=255)
gATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTg > 2:791532/1‑81 (MQ=255)
aTCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTgg > 2:791529/1‑81 (MQ=255)
tCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgc < 1:791476/81‑1 (MQ=255)
cgccgcCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgct > 1:791545/1‑81 (MQ=255)
gccgccGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctg > 1:791540/1‑81 (MQ=255)
gccgccGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgct < 2:791477/80‑1 (MQ=255)
gccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgct > 1:791542/1‑80 (MQ=255)
gccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgct > 2:791534/1‑80 (MQ=255)
gccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTc < 2:791478/81‑1 (MQ=255)
gTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATc > 1:791592/1‑81 (MQ=255)
cgcgCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGc > 2:791538/1‑81 (MQ=255)
gcgcACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACTATCAGCGCGTCGTGGCTGCTCATCGcc > 2:791548/1‑81 (MQ=255)
gcgcACGTCGCCAATTCCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCACCGCGTCCTTGCTGCTCATCGcc > 2:791528/1‑81 (MQ=255)
cgcACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCg < 2:791479/81‑1 (MQ=255)
gcACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGcc > 1:791541/1‑79 (MQ=255)
cACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAg < 2:791480/81‑1 (MQ=255)
aCGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGt > 2:791536/1‑81 (MQ=255)
cGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTg < 1:791481/81‑1 (MQ=255)
cGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTg > 1:791549/1‑81 (MQ=255)
ccAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAg < 2:791483/81‑1 (MQ=255)
ccAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAg < 1:791482/81‑1 (MQ=255)
cAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAgg < 1:791484/81‑1 (MQ=255)
cACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCa < 2:791485/81‑1 (MQ=255)
cGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAAc > 2:791553/1‑81 (MQ=255)
cGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAAc < 1:791486/81‑1 (MQ=255)
cATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACttt < 1:791487/81‑1 (MQ=255)
gTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGgcg < 1:791488/81‑1 (MQ=255)
cGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGcgcg < 2:791489/80‑1 (MQ=255)
tggtgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGt < 2:791490/81‑1 (MQ=255)
gtgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTg > 2:791552/1‑80 (MQ=255)
tgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTgaa < 2:791491/81‑1 (MQ=255)
|
CATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAA > NC_000913/4316877‑4317032
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
