Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,316,957 |
Δ1 bp |
coding (262/1137 nt) |
phnM ← |
RPnTP hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,316,956 | 0 | C | . | 100.0%
| 245.5
/ NA
| 52 | coding (263/1137 nt) | phnM | RPnTP hydrolase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (18/34); total (18/34) |
TCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAA > NC_000913/4316876‑4317032
|
tcatcTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGc > 2:861751/1‑81 (MQ=255)
tctcCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGc > 1:861846/1‑81 (MQ=255)
ctcCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCg < 1:861752/79‑1 (MQ=255)
cAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGccac > 1:861829/1‑80 (MQ=255)
cAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGcca < 1:861754/79‑1 (MQ=255)
gATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCAt < 2:861755/81‑1 (MQ=255)
gATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCAt < 1:861756/81‑1 (MQ=255)
aTTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATc < 1:861757/81‑1 (MQ=255)
ttCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCAt > 2:861837/1‑79 (MQ=255)
tctcCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAg > 1:861825/1‑81 (MQ=255)
aGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGcgt > 2:861852/1‑81 (MQ=255)
aTCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGACG‑CGCTCGCCACCATGAGCGCGTCGTgg > 2:861827/1‑81 (MQ=255)
cgccgcCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgct > 2:861845/1‑81 (MQ=255)
gccgccGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctg > 1:861826/1‑81 (MQ=255)
gccgccGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgct < 2:861758/80‑1 (MQ=255)
gccgccGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgct < 1:861759/80‑1 (MQ=255)
ccgccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgc < 2:861761/81‑1 (MQ=255)
ccgccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgc < 1:861760/81‑1 (MQ=255)
ccgccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgc > 2:861833/1‑81 (MQ=255)
cgccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgct > 2:861848/1‑81 (MQ=255)
cgccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgct > 1:861830/1‑81 (MQ=255)
gccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgct > 2:861844/1‑80 (MQ=255)
gccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGgctgct > 1:861859/1‑80 (MQ=255)
gccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTc < 1:861762/81‑1 (MQ=255)
ccgTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCa < 1:861763/81‑1 (MQ=255)
gTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATc < 1:861765/81‑1 (MQ=255)
gTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATc < 2:861764/81‑1 (MQ=255)
gcgcACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGcc < 1:861766/81‑1 (MQ=255)
cgcACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCg < 1:861767/81‑1 (MQ=255)
cACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAg > 2:861841/1‑81 (MQ=255)
gCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTggg > 2:861838/1‑79 (MQ=255)
gCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGc < 1:861769/80‑1 (MQ=255)
gCCAATTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCa < 1:861768/81‑1 (MQ=255)
aaTTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGc > 1:861839/1‑81 (MQ=255)
aaTTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGc > 1:861855/1‑81 (MQ=255)
aTTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGcc < 2:861770/81‑1 (MQ=255)
aTTGCCACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGcc < 2:861771/81‑1 (MQ=255)
ccACGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTc < 1:861772/81‑1 (MQ=255)
aCGGCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCaa < 1:861773/81‑1 (MQ=255)
ggCATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACt < 1:861774/81‑1 (MQ=255)
cATCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACttt > 1:861840/1‑81 (MQ=255)
aTCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTc < 1:861777/81‑1 (MQ=255)
aTCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTc < 2:861776/81‑1 (MQ=255)
aTCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTc < 2:861778/81‑1 (MQ=255)
aTCCAGTACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTAAACTTTc < 2:861775/81‑1 (MQ=255)
tACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGgcgc < 2:861779/81‑1 (MQ=255)
tACGGTGGTGATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGgcgc < 2:861780/81‑1 (MQ=255)
gtgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTga < 1:861782/81‑1 (MQ=255)
gtgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTg < 1:861785/80‑1 (MQ=255)
gtgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTg < 2:861783/80‑1 (MQ=255)
gtgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTg < 2:861784/80‑1 (MQ=255)
gtgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTg < 2:861781/80‑1 (MQ=255)
tgATG‑CGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTgaa < 1:861786/81‑1 (MQ=255)
|
TCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAA > NC_000913/4316876‑4317032
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
