Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,383,643 |
C→T |
intergenic (+23/‑196) |
epmA → / → yjeM |
EF‑P‑lysine lysyltransferase/putative transporter YjeM |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,383,643 | 0 | C | T | 100.0%
| 73.7
/ NA
| 22 | intergenic (+23/‑196) | epmA/yjeM | EF‑P‑lysine lysyltransferase/putative transporter YjeM |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (8/14); total (8/14) |
CGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACT > NC_000913/4383565‑4383719
|
cgcTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAg > 2:805235/1‑81 (MQ=255)
gcTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGc < 2:805213/81‑1 (MQ=255)
cTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCg < 2:805215/81‑1 (MQ=255)
cTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCg < 2:805216/81‑1 (MQ=255)
cTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCg < 1:805214/81‑1 (MQ=255)
ggCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCgaag < 2:805217/81‑1 (MQ=255)
cgGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATg < 1:805218/81‑1 (MQ=255)
agaCACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCg > 2:805240/1‑81 (MQ=255)
tGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAgcgc > 2:805241/1‑81 (MQ=255)
aaGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCa < 2:805219/81‑1 (MQ=255)
tCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTc < 1:805220/81‑1 (MQ=255)
tCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTc > 2:805245/1‑81 (MQ=255)
gCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGt > 2:805243/1‑81 (MQ=255)
gCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGt > 2:805242/1‑81 (MQ=255)
aCCGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCAt < 2:805221/81‑1 (MQ=255)
cGGGCATAATTCTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCAttt < 1:805222/81‑1 (MQ=255)
cTGAAAAATTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTaaa < 2:805223/80‑1 (MQ=255)
aaTTACTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCcaca < 1:805224/81‑1 (MQ=255)
cTGAATTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAAttt < 2:805225/80‑1 (MQ=255)
aaTTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGa > 2:805266/1‑81 (MQ=255)
aTTAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGAc > 2:805247/1‑81 (MQ=255)
ttAATAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACt < 1:805226/81‑1 (MQ=255)
|
CGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACT > NC_000913/4383565‑4383719
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
