Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,391,914 |
T→C |
I104T (ATT→ACT) |
orn → |
oligoribonuclease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,391,914 | 0 | T | C | 100.0%
| 135.8
/ NA
| 37 | I104T (ATT→ACT) | orn | oligoribonuclease |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/19); total (18/19) |
GATGGGCGATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGATTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCTACTTCCACTACC > NC_000913/4391840‑4391991
|
gATGGGCGATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCgg > 2:879158/1‑81 (MQ=255)
tGGGCGATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGt > 1:879167/1‑80 (MQ=255)
tGGGCGATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTa < 2:879112/81‑1 (MQ=255)
gCGATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTaa > 1:879155/1‑79 (MQ=255)
gCGATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTaa > 1:879176/1‑79 (MQ=255)
gATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAg > 1:879156/1‑80 (MQ=255)
gggAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATc < 1:879113/80‑1 (MQ=255)
aaGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGt > 1:879168/1‑80 (MQ=255)
aaGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTc < 2:879115/81‑1 (MQ=255)
aaGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTc < 1:879114/81‑1 (MQ=255)
aGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCa < 2:879116/81‑1 (MQ=255)
aaCTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGAcc < 1:879117/81‑1 (MQ=255)
cTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACcgt < 2:879118/81‑1 (MQ=255)
ggCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACcgtcg > 2:879173/1‑81 (MQ=255)
ggCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACcgtcg > 2:879170/1‑81 (MQ=255)
ggCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACcgtcg > 2:879174/1‑81 (MQ=255)
gCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACcgtc < 2:879119/79‑1 (MQ=255)
cAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGtt > 2:879177/1‑81 (MQ=255)
aaCGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGttt < 1:879120/81‑1 (MQ=255)
aCGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTc > 1:879164/1‑81 (MQ=255)
aaTTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGttt > 1:879171/1‑80 (MQ=255)
ttAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATa < 2:879121/80‑1 (MQ=255)
tAAAACAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACa > 1:879161/1‑81 (MQ=255)
aaCAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGc < 1:879122/81‑1 (MQ=255)
aCAGTGGGTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGcc < 2:879123/81‑1 (MQ=255)
gTGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTg > 1:879182/1‑81 (MQ=255)
tGCCTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTgg < 1:879124/81‑1 (MQ=255)
ccTGCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTgg > 2:879172/1‑79 (MQ=255)
gCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGcc > 2:879169/1‑81 (MQ=255)
gCGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGcc > 1:879165/1‑81 (MQ=255)
cGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGcc > 1:879178/1‑80 (MQ=255)
cGGGAAAATCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCt < 2:879125/81‑1 (MQ=255)
aaaTCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCTACTTc < 1:879127/81‑1 (MQ=255)
aaaTCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCTACTTc < 1:879126/81‑1 (MQ=255)
tCGCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCTACTTCCAc < 2:879128/81‑1 (MQ=255)
gCCGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCTACTTCCACt < 1:879129/80‑1 (MQ=255)
cGACTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCTACTTCCACTAcc < 2:879130/81‑1 (MQ=255)
|
GATGGGCGATCGGGAAGCTGAACTGGCAACGCTCGAATTTTTAAAACAGTGGGTGCCTGCGGGAAAATCGCCGATTTGCGGTAACAGCATCGGTCAGGACCGTCGTTTCCTGTTTAAATACATGCCGGAGCTGGAAGCCTACTTCCACTACC > NC_000913/4391840‑4391991
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
