Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,438,717 |
C→T |
L182L (TTG→TTA) |
ytfJ ← |
protein YtfJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,438,717 | 0 | C | T | 100.0%
| 78.0
/ NA
| 23 | L182L (TTG→TTA) | ytfJ | protein YtfJ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (14/9); total (14/9) |
AATTCCCCTATCCCATAGATAACGATAGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGCAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTGGCCCATTGCACGCGAC > NC_000913/4438644‑4438793
|
aaTTCCCCTATCCCATAGATAACGATAGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGTAACttt < 1:816970/80‑1 (MQ=255)
cccTATCCCATAGATAACGATAGGGGAAAATTATTTTTGCAGAGTTTATGTTATTGCCATTATTTGAGTAACTTTTgcag < 1:816971/80‑1 (MQ=255)
cccTATCCCATAGATAACGATAGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGTAACTTTTgcag < 1:816972/80‑1 (MQ=255)
aGATAACGATAGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCAc > 2:817009/1‑81 (MQ=255)
aCGATAGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTtgct < 2:816973/81‑1 (MQ=255)
gATAGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTtgctg > 2:816999/1‑80 (MQ=255)
aGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCAcc > 2:817025/1‑81 (MQ=255)
ttGCAGAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAgc > 1:817000/1‑81 (MQ=255)
aGAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGccc > 2:817028/1‑81 (MQ=255)
aGAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGccc > 1:817006/1‑81 (MQ=255)
gAATTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGcccc < 2:816974/81‑1 (MQ=255)
caTTTATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTTAGCGCCCCg > 2:817017/2‑81 (MQ=255)
tttATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTc > 1:817021/1‑81 (MQ=255)
tttATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTc > 2:817008/1‑81 (MQ=255)
ttATGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCt > 1:817005/1‑81 (MQ=255)
tGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCttt < 2:816975/80‑1 (MQ=255)
tGTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCttt < 2:816976/80‑1 (MQ=255)
gTTATTGCCATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTgg > 1:817012/1‑81 (MQ=255)
cATTATTTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTGGCCCATTg > 1:817011/1‑80 (MQ=255)
ttattTGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTGGCCCATTGCAc < 1:816977/81‑1 (MQ=255)
tttGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTGGCCCATTGCAcgcg < 1:816978/81‑1 (MQ=255)
tttGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTGGCCCATTGCAcgc > 1:817015/1‑80 (MQ=255)
tGAGTAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTGGCCCATTGCACGCGAc > 2:817023/1‑81 (MQ=255)
|
AATTCCCCTATCCCATAGATAACGATAGGGGAAAATTATTTTTGCAGAATTTATGTTATTGCCATTATTTGAGCAACTTTTGCAGCAGGTCCATCACTTGCTGCACCTCTTCCGGTGTGAGCGCCCCGTCTTTGGCCCATTGCACGCGAC > NC_000913/4438644‑4438793
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
