Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,550,379 |
A→G |
I306I (ATT→ATC) |
gntP ← |
fructuronate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,550,379 | 0 | A | G | 100.0%
| 106.4
/ NA
| 30 | I306I (ATT→ATC) | gntP | fructuronate transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/15); total (15/15) |
CATCAACATGCCGATGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGAATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCGGTGC > NC_000913/4550301‑4550455
|
cATCAACATGCCGATGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGAt < 1:838707/81‑1 (MQ=255)
aTCAACATGCCGATGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATc < 2:838708/81‑1 (MQ=255)
cATGCCGATGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCAt > 1:838754/1‑81 (MQ=255)
tGCCGATGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTg < 2:838709/81‑1 (MQ=255)
ccGATGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGc < 1:838710/80‑1 (MQ=255)
aTGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATa < 1:838711/81‑1 (MQ=255)
tCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTc < 1:838712/81‑1 (MQ=255)
cGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCa > 2:838757/1‑81 (MQ=255)
cAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACcg > 1:838749/1‑81 (MQ=255)
aaTGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACcgc > 2:838771/1‑81 (MQ=255)
ggTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCttt > 2:838755/1‑80 (MQ=255)
gtgtCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCa < 2:838714/81‑1 (MQ=255)
gtgtCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCa < 2:838713/81‑1 (MQ=255)
tgtCGATGATGGTCTGCTTCAGCACGCCACCCGCGCCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCaa < 2:838715/81‑1 (MQ=255)
atgatgGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCg > 1:838746/1‑81 (MQ=255)
cTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCAc > 1:838764/1‑81 (MQ=255)
cTGCTTCAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCAc > 2:838751/1‑81 (MQ=255)
cAGCACGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTg > 1:838773/1‑81 (MQ=255)
aCGCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATg > 2:838756/1‑81 (MQ=255)
gCCACCCGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGt > 1:838770/1‑80 (MQ=255)
cccGCACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGa > 1:838777/1‑81 (MQ=255)
cACCGATGATCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCAc < 1:838716/81‑1 (MQ=255)
gatgatCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGc < 2:838717/81‑1 (MQ=255)
atgatCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCg < 2:838718/81‑1 (MQ=255)
atgatCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCg < 1:838719/81‑1 (MQ=255)
atCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCGGt < 1:838721/80‑1 (MQ=255)
atCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCGGTg < 2:838720/81‑1 (MQ=255)
tCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCGGTGc > 2:838750/1‑81 (MQ=255)
tCAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCGGTGc > 1:838767/1‑81 (MQ=255)
cAGGATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCGGTGc > 1:838761/1‑80 (MQ=255)
|
CATCAACATGCCGATGGTGTCGCCAATGCCGGTGTCGATGATGGTCTGCTTCAGCACGCCACCCGCACCGATGATCAGAATCACCATTGCAATACTCTTCACCGCGCTTTCAAAAGCGTTCATCACCCACTGCATGTCATGACCACGTGCGGTGC > NC_000913/4550301‑4550455
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
