Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,551,712 |
G→A |
G26D (GGC→GAC) |
uxuA → |
D‑mannonate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,551,712 | 0 | G | A | 100.0%
| 169.5
/ NA
| 46 | G26D (GGC→GAC) | uxuA | D‑mannonate dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (29/17); total (29/17) |
ATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCA > NC_000913/4551636‑4551789
|
aTGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGt < 1:915495/80‑1 (MQ=255)
gAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGtt < 2:915497/81‑1 (MQ=255)
gAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTATTTAGCTGATGTCCGTCAGGCGGGCGAAACTGAAGTGGtt < 2:915496/81‑1 (MQ=255)
cAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTAcc < 1:915498/81‑1 (MQ=255)
cAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTAcc > 1:915500/1‑81 (MQ=255)
cAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTAcc < 2:915499/81‑1 (MQ=255)
cAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTAcc > 1:915529/1‑81 (MQ=255)
aGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACcg > 1:915547/1‑81 (MQ=255)
tGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTg > 2:915555/1‑81 (MQ=255)
cgcTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCAc < 2:915501/81‑1 (MQ=255)
tACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTAACGTGGTTACCGCGCTGCACCATATc < 1:915502/81‑1 (MQ=255)
aCGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATcc > 1:915540/1‑81 (MQ=255)
cGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATccc < 1:915503/81‑1 (MQ=255)
aaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGc > 1:915549/1‑81 (MQ=255)
cGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCg > 2:915568/1‑80 (MQ=255)
gATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCg > 1:915556/1‑79 (MQ=255)
gATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCg > 1:915531/1‑79 (MQ=255)
gATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCg > 2:915536/1‑79 (MQ=255)
tCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGt < 1:915504/81‑1 (MQ=255)
ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATg > 2:915543/1‑81 (MQ=255)
gTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATgg > 1:915548/1‑81 (MQ=255)
gTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATgg > 1:915539/1‑81 (MQ=255)
cTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCg > 2:915535/1‑81 (MQ=255)
tAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGtt < 2:915505/80‑1 (MQ=255)
tAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGtt < 1:915506/80‑1 (MQ=255)
tAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGt < 2:915507/79‑1 (MQ=255)
tAGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGt < 1:915508/79‑1 (MQ=255)
aGCTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTg > 1:915545/1‑80 (MQ=255)
cTGATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAag < 2:915509/81‑1 (MQ=255)
gATGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGaa > 1:915553/1‑78 (MQ=255)
aTGTCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAagag < 1:915510/80‑1 (MQ=255)
tCCGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATcc > 1:915565/1‑81 (MQ=255)
ccGTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCt > 2:915558/1‑81 (MQ=255)
gTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTc > 2:915557/1‑80 (MQ=255)
gTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTc > 1:915564/1‑80 (MQ=255)
gTCAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTc > 1:915551/1‑80 (MQ=255)
cAGGCGGGCGCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCaaa > 2:915571/1‑81 (MQ=255)
ggcgggcgCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACg < 2:915511/81‑1 (MQ=255)
ggcgCAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAg < 2:915512/81‑1 (MQ=255)
cgcAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACCGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGc > 1:915570/1‑81 (MQ=255)
gcAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGc > 1:915550/1‑80 (MQ=255)
cAACTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGa > 1:915554/1‑81 (MQ=255)
aaCTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGAt > 2:915544/1‑81 (MQ=255)
aaCTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGAt > 1:915546/1‑81 (MQ=255)
aaCTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGAt > 2:915576/1‑81 (MQ=255)
cTGACGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCa > 1:915584/1‑81 (MQ=255)
|
ATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCA > NC_000913/4551636‑4551789
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
