Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,573,970 |
A→T |
intergenic (+39/‑165) |
yjiT → / → yjiV |
putative uncharacterized protein YjiT/putative uncharacterized protein YjiV |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,573,970 | 0 | A | T | 100.0%
| 94.2
/ NA
| 28 | intergenic (+39/‑165) | yjiT/yjiV | putative uncharacterized protein YjiT/putative uncharacterized protein YjiV |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (12/16); total (12/16) |
TTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTC > NC_000913/4573897‑4574041
|
ttCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGt < 2:843358/81‑1 (MQ=255)
aTTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAg > 2:843401/1‑81 (MQ=255)
aTTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAg < 2:843359/81‑1 (MQ=255)
aaCGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCaa > 2:843390/1‑81 (MQ=255)
aCGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCaa < 1:843360/80‑1 (MQ=255)
gcgTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCt < 1:843361/81‑1 (MQ=255)
cacGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGc < 2:843362/80‑1 (MQ=255)
cGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCaaa < 1:843363/81‑1 (MQ=255)
gTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAg > 2:843398/1‑81 (MQ=255)
gTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAg < 2:843364/81‑1 (MQ=255)
tGCTGACAAAACAGCATTACAGCCAGCAGGAGGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAgg < 2:843365/81‑1 (MQ=255)
tGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAgg < 1:843366/81‑1 (MQ=255)
gCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGa > 1:843394/1‑81 (MQ=255)
cTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGAt < 1:843367/81‑1 (MQ=255)
aaaaCAGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGc < 1:843368/81‑1 (MQ=255)
aGCATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTc < 1:843369/81‑1 (MQ=255)
cATTACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCtt < 2:843370/81‑1 (MQ=255)
ttACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTaa < 2:843371/81‑1 (MQ=255)
tACAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTa > 2:843411/1‑79 (MQ=255)
aCAGCCAGCAGGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAg > 2:843406/1‑81 (MQ=255)
agcagGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAggg > 2:843399/1‑81 (MQ=255)
agGAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGgcg > 1:843409/1‑80 (MQ=255)
gAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCat < 1:843372/81‑1 (MQ=255)
gAAGTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCa > 2:843403/1‑80 (MQ=255)
gTACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATc > 2:843404/1‑81 (MQ=255)
tACTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCt > 1:843415/1‑81 (MQ=255)
aCTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCtt > 1:843391/1‑81 (MQ=255)
cTGCGTTGGTTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTc < 1:843373/81‑1 (MQ=255)
|
TTCAAAGCATTGATGTAACGCGTTACACGTGCTGACAAAACAGCATTACAGCCAGCAGGAAGTACTGCGTTGGATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTC > NC_000913/4573897‑4574041
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
