Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,769,837 |
(T)7→8 |
intergenic (+157/+406) |
yibV → / ← yibH |
PF15596 family protein YibV/inner membrane protein YibH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,769,830 | 1 | . | T | 100.0%
| 24.2
/ NA
| 8 | intergenic (+150/+413) | yibV/yibH | PF15596 family protein YibV/inner membrane protein YibH |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (6/2); total (6/2) |
TGCATCGATGAATGATAACTTAATTTTATTTAAAAATATATTAATAACTCACTCTCCAGGAG‑TTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAGTTGTATACATATATTCCAT > NC_000913/3769769‑3769905
|
tGCATCGATGAATGATAACTTAATTTTATTTAAAAATATATTAATAACTCACTCTCCAGGAGTTTTTTTTAACTTAGtttt < 1:732258/81‑1 (MQ=255)
tgaTAACTTAATTTTATTTAAAAATATATTAATAACTCACTCTCCAGGAGTTTTTTTTAACTTAGTTTTATAATGAATAc > 1:732275/1‑80 (MQ=255)
tatTAATAACTCACTCTCCAGGAGTTTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAg > 1:732271/1‑81 (MQ=255)
aataaCTCACTCTCCAGGAGTTTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAGTTg > 2:732284/1‑80 (MQ=255)
taaCTCACTCTCCAGGAGTTTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAGTTGtat < 2:732259/81‑1 (MQ=255)
cactcTCCAGGAGTTTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAGTTGTATACata > 2:732274/1‑81 (MQ=255)
actcTCCAGGAGTTTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAGTTGTATACata > 1:732269/1‑80 (MQ=255)
aGGAGTTTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAGTTGTATACATATATTCCAt > 2:732272/1‑81 (MQ=255)
|
TGCATCGATGAATGATAACTTAATTTTATTTAAAAATATATTAATAACTCACTCTCCAGGAG‑TTTTTTTAACTTAGTTTTATAATGAATACGATAATTAAAAGTGAAGAAGAAAATAGTTGTATACATATATTCCAT > NC_000913/3769769‑3769905
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
