Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,093,668 |
(T)5→4 |
coding (605/825 nt) |
rhaD ← |
rhamnulose‑1‑phosphate aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,093,664 | 0 | T | . | 100.0%
| 234.3
/ NA
| 50 | coding (609/825 nt) | rhaD | rhamnulose‑1‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (26/24); total (26/24) |
GTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCAT > NC_000913/4093584‑4093740
|
gtgtCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGt < 1:808032/81‑1 (MQ=255)
gtgtCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGt > 1:808105/1‑81 (MQ=255)
tCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGtttt < 2:808033/81‑1 (MQ=255)
gATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGttttgc < 1:808034/81‑3 (MQ=255)
gATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGttttg > 2:808109/1‑79 (MQ=255)
aTTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGttttgca > 2:808035/1‑78 (MQ=255)
ttAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGttttgcat < 2:808036/81‑5 (MQ=255)
ttAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGttttgcat > 1:808106/1‑77 (MQ=255)
tAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCAtc > 2:808097/1‑81 (MQ=255)
aaaCCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCAtcc > 1:808114/1‑80 (MQ=255)
aaCCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCAtctc < 1:808037/81‑1 (MQ=255)
aCCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATctct > 2:808118/1‑81 (MQ=255)
ccGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCtt < 2:808038/81‑1 (MQ=255)
gAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTtgt > 1:808116/1‑81 (MQ=255)
gAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTtgt > 1:808107/1‑81 (MQ=255)
gAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTtgt > 1:808091/1‑81 (MQ=255)
ttCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTc > 1:808102/1‑81 (MQ=255)
tCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTc < 2:808039/80‑1 (MQ=255)
tCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCg > 2:808110/1‑81 (MQ=255)
cATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCg < 2:808040/80‑1 (MQ=255)
ccAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTg > 1:808099/1‑81 (MQ=255)
cAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTgg < 1:808041/81‑1 (MQ=255)
cAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTgg > 2:808113/1‑81 (MQ=255)
gCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGcc < 2:808042/81‑1 (MQ=255)
gTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGa > 1:808112/1‑81 (MQ=255)
ggTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGAttt < 1:808044/81‑1 (MQ=255)
ggTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGAttt < 2:808045/81‑1 (MQ=255)
ggTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGAttt > 2:808124/1‑81 (MQ=255)
ggTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCAAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGAttt < 1:808043/81‑1 (MQ=255)
gTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTc < 1:808047/81‑1 (MQ=255)
gTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTc < 1:808046/81‑1 (MQ=255)
gTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTc > 1:808115/1‑81 (MQ=255)
cGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTc > 2:808096/1‑81 (MQ=255)
cTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCg < 2:808048/81‑1 (MQ=255)
gCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTg > 1:808125/1‑81 (MQ=255)
gCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTg > 2:808119/1‑81 (MQ=255)
cGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGcc < 1:808050/81‑1 (MQ=255)
cGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGcc < 2:808049/81‑1 (MQ=255)
aaGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCgg > 2:808052/1‑81 (MQ=255)
aaGACGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCgg < 2:808051/81‑1 (MQ=255)
cGCCGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCAc < 1:808053/81‑1 (MQ=255)
ccGTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCa < 1:808054/81‑1 (MQ=255)
gTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATc < 2:808055/81‑1 (MQ=255)
gTGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATc > 2:808100/1‑81 (MQ=255)
tGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATcc < 1:808056/81‑1 (MQ=255)
tGGAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATc > 2:808094/1‑80 (MQ=255)
ggAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCa > 1:808089/1‑81 (MQ=255)
gAAGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCAc > 1:808103/1‑81 (MQ=255)
aaGGGCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACg > 1:808098/1‑81 (MQ=255)
ggCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGc > 1:808104/1‑80 (MQ=255)
gCCACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCaa < 2:808057/81‑1 (MQ=255)
ccACAACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCaa > 2:808101/1‑80 (MQ=255)
cacaACACCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCaaaa > 2:808135/1‑81 (MQ=255)
acacCAGCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGc > 1:808121/1‑80 (MQ=255)
gCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGcc < 1:808058/81‑1 (MQ=255)
gCGAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGcc < 1:808059/81‑1 (MQ=255)
gAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCAt < 1:808060/81‑1 (MQ=255)
gAATG‑TTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCAt < 1:808061/81‑1 (MQ=255)
|
GTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCAT > NC_000913/4093584‑4093740
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
