Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,333,287 |
T→C |
N222D (AAC→GAC) |
basR ← |
DNA‑binding transcriptional dual regulator BasR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,333,287 | 0 | T | C | 100.0%
| 120.2
/ NA
| 33 | N222D (AAC→GAC) | basR | DNA‑binding transcriptional dual regulator BasR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (16/17); total (16/17) |
AAATGGCCCCGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTTTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGCCCACTTTGTCGCG > NC_000913/4333209‑4333359
|
aaaTGGCCCCGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGtctt > 1:866179/1‑81 (MQ=255)
aaaTGGCCCCGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGtctt < 2:866128/81‑1 (MQ=255)
aaaTGGCCCCGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGtctt > 2:866164/1‑81 (MQ=255)
aaaTGGCCCCGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGtctt > 1:866159/1‑81 (MQ=255)
tGGCCCCGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCt > 1:866193/1‑81 (MQ=255)
ccccGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCAt < 1:866129/81‑1 (MQ=255)
ccGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTc < 2:866130/81‑1 (MQ=255)
ccGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATCCAATTAGTCTTCCTCATTc < 2:866131/81‑1 (MQ=255)
gATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTcgc > 1:866166/1‑81 (MQ=255)
aTGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTcgcg < 2:866132/81‑1 (MQ=255)
cAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAg > 1:866187/1‑81 (MQ=255)
tatCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCat < 1:866133/81‑1 (MQ=255)
tatCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCat < 2:866134/81‑1 (MQ=255)
cAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCata > 1:866175/1‑79 (MQ=255)
aGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAg > 2:866168/1‑81 (MQ=255)
ttGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCaaa < 1:866135/81‑1 (MQ=255)
tGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAg > 1:866185/1‑81 (MQ=255)
gcgcAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGcc < 1:866136/81‑1 (MQ=255)
gcAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCcgc < 2:866137/81‑1 (MQ=255)
aGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCcgcg > 1:866186/1‑80 (MQ=255)
atTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTg > 2:866189/1‑81 (MQ=255)
atTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTg > 1:866172/1‑81 (MQ=255)
ttGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGc > 1:866181/1‑81 (MQ=255)
tGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCg > 1:866177/1‑81 (MQ=255)
gTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCgg < 2:866138/80‑1 (MQ=255)
gTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGa > 1:866167/1‑81 (MQ=255)
gTCGGCGCAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGa < 1:866139/81‑1 (MQ=255)
cgcAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACgg < 1:866140/81‑1 (MQ=255)
cgcAGAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACgg > 2:866171/1‑81 (MQ=255)
gAAAATGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCtt < 1:866141/81‑1 (MQ=255)
tGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGccc < 1:866143/81‑1 (MQ=255)
tGCATCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGccc < 1:866142/81‑1 (MQ=255)
tCAGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTTCGGATACGGGCTTTGCCCACtt > 1:866174/1‑81 (MQ=255)
aGATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGCCCACttt < 2:866144/80‑1 (MQ=255)
gATTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGCCCACTTTGt > 1:866176/1‑81 (MQ=255)
aTTCAATTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGCCCACTTTGTc < 2:866145/81‑1 (MQ=255)
aTTAGTCTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGCCCACTTTGTcgcg > 2:866173/1‑79 (MQ=255)
|
AAATGGCCCCGATGGTCAATATCAGCCGTTGGCGCAGCGATATTGGTCGGCGCAGAAAATGCATCAGATTCAATTAGTTTTCCTCATTCGCGACCAGCATATAGCCAAAGCCGCGCACGGTGCGGATACGGGCTTTGCCCACTTTGTCGCG > NC_000913/4333209‑4333359
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
