Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,333,655 |
A→T |
L99Q (CTG→CAG) |
basR ← |
DNA‑binding transcriptional dual regulator BasR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,333,655 | 0 | A | T | 100.0%
| 106.8
/ NA
| 30 | L99Q (CTG→CAG) | basR | DNA‑binding transcriptional dual regulator BasR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (18/12); total (18/12) |
TCGCCCTGATTATTATGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCAGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAGCGGTGAGGATCAGTACCGG > NC_000913/4333580‑4333731
|
tCGCCCTGATTATGATGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGAt < 2:866214/79‑1 (MQ=255)
gCCCTGATTATTATGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAgtc > 1:866263/1‑81 (MQ=255)
cccTGATTATTATGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAgtcg > 2:866269/1‑81 (MQ=255)
ttatGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCg < 1:866215/81‑1 (MQ=255)
atGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGa > 2:866267/1‑80 (MQ=255)
atGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGa > 1:866259/1‑80 (MQ=255)
tGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACa > 2:866272/1‑81 (MQ=255)
gCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATc > 2:866275/1‑81 (MQ=255)
gtAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGcc > 1:866280/1‑81 (MQ=255)
tAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGccc < 2:866216/81‑1 (MQ=255)
gCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCgg > 2:866268/1‑81 (MQ=255)
gCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCg < 1:866218/80‑1 (MQ=255)
gCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCg < 1:866217/80‑1 (MQ=255)
cAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGc > 2:866279/1‑81 (MQ=255)
cAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGc > 2:866270/1‑81 (MQ=255)
cAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGc < 1:866219/81‑1 (MQ=255)
cgcgGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGAttt > 2:866276/1‑81 (MQ=255)
cgGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTg > 1:866278/1‑81 (MQ=255)
gATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTc > 2:866277/1‑81 (MQ=255)
aTACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCg > 2:866273/1‑81 (MQ=255)
tACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCgg > 2:866271/1‑81 (MQ=255)
cGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTc < 2:866220/81‑1 (MQ=255)
ctctTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATcgcg < 2:866221/81‑1 (MQ=255)
ctctTCCAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATcgc > 2:866266/1‑80 (MQ=255)
ccAGCGCAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAg < 2:866222/78‑1 (MQ=255)
cgcAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAGCGGTGAg < 2:866223/81‑1 (MQ=255)
gcAAAAGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAGCGGTGAgg < 2:866224/81‑1 (MQ=255)
aaaaGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAGCGGTGAGGAt > 2:866288/1‑81 (MQ=255)
aaGGCTTCACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAGCGGTGAGGATCa < 2:866225/81‑1 (MQ=255)
cACCTGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAGCGGTGAGGATCAGTACCgg > 2:866274/1‑81 (MQ=255)
|
TCGCCCTGATTATTATGGCGTCGTAGCAGGGCGCGGATACGGGCATGTAACTCTTCCAGCGCAAAAGGCTTCACCAGATAGTCGTCGGCACCGACATCCAGCCCGGCGATTTTGTCGGTCAGCGTATCGCGAGCGGTGAGGATCAGTACCGG > NC_000913/4333580‑4333731
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
