Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I2 R1 12 27.9 1984062 98.2% 1948348 80.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,917,504 Δ28 bp coding (735‑762/864 nt) atpG ← ATP synthase F1 complex subunit gamma

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3917504 3917531 28 43 [0] [0] 43 atpG ATP synthase F1 complex subunit gamma

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39175030 (0.000)42 (1.310) 36/154 0.1 100% coding (763/864 nt) atpG ATP synthase F1 complex subunit gamma
?NC_000913 3917532 = 0 (0.000)coding (734/864 nt) atpG ATP synthase F1 complex subunit gamma

GATK/CNVnator alignment

N/A