Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	169	80.7	2736954	99.0%	2709584	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,084,911	T→C	V205V (GTA→GTG)	yeeE ←	inner membrane protein YeeE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,084,911	0	T	C	100.0%	278.0 / NA	76	V205V (GTA→GTG)	yeeE	inner membrane protein YeeE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (42/34); total (42/34)

AGTTAATGTATTTCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGTACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCAGAGCGTTATC  >  NC_000913/2084778‑2085040

aGTTAATGTATTTCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCt                                                                                                                             <  2:692888/140‑1 (MQ=255)

aGTTAATGTATTTCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCt                                                                                                                             <  1:538543/140‑1 (MQ=255)

          tttCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAgg                                                                                                                   >  2:174393/1‑140 (MQ=255)

           ttCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAggg                                                                                                                  >  1:326110/1‑140 (MQ=255)

           ttCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAggg                                                                                                                  >  1:1329380/1‑140 (MQ=255)

            tCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGa                                                                                                                 >  1:942959/1‑140 (MQ=255)

                gTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGcc                                                                                                             >  2:706855/1‑140 (MQ=255)

                gTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGcc                                                                                                             >  1:1213069/1‑140 (MQ=255)

                gTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGcc                                                                                                             <  1:174393/140‑1 (MQ=255)

                gTCACCCGCGACCAGAAATTGCAGAATATTGGCCGGTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGGTGcc                                                                                                             >  2:1104279/1‑140 (MQ=255)

                 tCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCa                                                                                                            >  1:268009/1‑140 (MQ=255)

                  cACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGAt                                                                                                                >  1:1022673/1‑135 (MQ=255)

                  cACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGAt                                                                                                                <  2:1022673/135‑1 (MQ=255)

                   aCCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGc                                                                                                          >  1:58848/1‑140 (MQ=255)

                    cccGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCg                                                                                                         >  2:747434/1‑140 (MQ=255)

                       gcgACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGttt                                                                                                      >  1:1015985/1‑140 (MQ=255)

                          aCCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTc                                                                                                   >  2:661778/1‑140 (MQ=255)

                           ccAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCa                                                                                                  <  1:2418/140‑1 (MQ=255)

                           ccAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCa                                                                                                  <  1:706855/140‑1 (MQ=255)

                             aGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCaaa                                                                                                <  1:1301469/140‑1 (MQ=255)

                             aGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCaaa                                                                                                <  1:1183456/140‑1 (MQ=255)

                             aGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCaaa                                                                                                <  2:565260/140‑1 (MQ=255)

                                     cAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAatat                                                                                        >  2:436690/1‑140 (MQ=255)

                                                ccGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGc                                                                                    <  2:551858/133‑1 (MQ=255)

                                                ccGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGc                                                                                    >  1:551858/1‑133 (MQ=255)

                                                    tGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTc                                                                         >  1:362956/1‑140 (MQ=255)

                                                      gggAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcgg                                                                       <  2:890015/140‑1 (MQ=255)

                                                        gAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcggcg                                                                     <  1:841257/140‑1 (MQ=255)

                                                        gAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcggcg                                                                     <  1:1325319/140‑1 (MQ=255)

                                                        gAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcggcg                                                                     <  2:362956/140‑1 (MQ=255)

                                                         aaGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcggcgc                                                                    <  2:942959/140‑1 (MQ=255)

                                                           gTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcggcgcgg                                                                  <  2:1015985/140‑1 (MQ=255)

                                                                tCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcggcgc                                                                    <  1:1309076/133‑1 (MQ=255)

                                                                tCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTcggcgc                                                                    >  2:1309076/1‑133 (MQ=255)

                                                                      cccAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGt                                                              >  1:411495/1‑133 (MQ=255)

                                                                      cccAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGt                                                              >  1:400255/1‑133 (MQ=255)

                                                                      cccAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGt                                                              <  2:411495/133‑1 (MQ=255)

                                                                      cccAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGt                                                              <  2:400255/133‑1 (MQ=255)

                                                                      cccAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTcg                                                       <  1:1178380/140‑1 (MQ=255)

                                                                          aaCATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGAc                                                   >  1:746970/1‑140 (MQ=255)

                                                                          aaCATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGACGCGAc                                                   >  2:967685/1‑140 (MQ=255)

                                                                                cGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAg                                             >  1:574463/1‑140 (MQ=255)

                                                                                 gTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGt                                            >  2:1240308/1‑140 (MQ=255)

                                                                                  tCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGtt                                           <  2:636322/140‑1 (MQ=255)

                                                                                       ttGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACtt                                                 >  1:144398/1‑129 (MQ=255)

                                                                                       ttGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACtt                                                 <  2:144398/129‑1 (MQ=255)

                                                                                       ttGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGc                                      <  1:661778/140‑1 (MQ=255)

                                                                                       ttGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGc                                      <  2:62829/140‑1 (MQ=255)

                                                                                       ttGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGc                                      <  2:1028460/140‑1 (MQ=255)

                                                                                              aCTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCa                               <  2:746970/140‑1 (MQ=255)

                                                                                                    gggCCAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCtt                         >  2:227602/1‑140 (MQ=255)

                                                                                                       ccAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCttt                        >  2:824729/1‑138 (MQ=255)

                                                                                                       ccAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCttt                        <  1:824729/138‑1 (MQ=255)

                                                                                                       ccAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtca                      >  1:185778/1‑140 (MQ=255)

                                                                                                       ccAGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtca                      >  2:821414/1‑140 (MQ=255)

                                                                                                         aGGCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtcatc                    >  2:232068/1‑140 (MQ=255)

                                                                                                          ggCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAActct                          >  2:1025676/1‑133 (MQ=255)

                                                                                                          ggCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAActct                          <  1:1025676/133‑1 (MQ=255)

                                                                                                          ggCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtcatca                   >  2:1046669/1‑140 (MQ=255)

                                                                                                          ggCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtcatca                   >  1:1172463/1‑140 (MQ=255)

                                                                                                          ggCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtcatca                   >  1:716758/1‑140 (MQ=255)

                                                                                                          ggCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtcatca                   <  1:747434/140‑1 (MQ=255)

                                                                                                          ggCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTtcatca                   >  1:999306/1‑140 (MQ=255)

                                                                                                           gCTAAAAGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATcac                  <  1:1240308/140‑1 (MQ=255)

                                                                                                              aaaaGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATcaccac               >  2:576259/1‑140 (MQ=255)

                                                                                                              aaaaGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATcaccac               >  2:1252732/1‑140 (MQ=255)

                                                                                                                aaGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCAccc             <  2:574463/140‑1 (MQ=255)

                                                                                                                aaGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTAGCTTCTTCAACTCTTTCATCACCAccc             >  2:1117871/1‑140 (MQ=255)

                                                                                                                 aGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCa            <  2:185778/140‑1 (MQ=255)

                                                                                                                 aGCGCAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCa            <  1:1239219/140‑1 (MQ=255)

                                                                                                                     cAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCAGAGc        >  1:817894/1‑140 (MQ=255)

                                                                                                                     cAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCAGAGc        >  2:51201/1‑140 (MQ=255)

                                                                                                                     cAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCAGAGc        >  1:1072819/1‑140 (MQ=255)

                                                                                                                     cAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCAGAGc        >  2:953902/1‑140 (MQ=255)

                                                                                                                     cAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCACCACCACCCAGAGc        >  2:1083384/1‑140 (MQ=255)

                                                                                                                     cAATCAAACCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTAGGCTTCTTCAACTCTTTCATCACCACCCAGAGc        >  2:1088236/1‑140 (MQ=255)

                                                                                                                           aaCCGATGAGCACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCAGAGCGTTATc  <  2:326110/140‑1 (MQ=255)

AGTTAATGTATTTCATGTCACCCGCGACCAGAAATTGCAGAATATTGGCCGTTGGGGAAGTGATTCCTAACCCAAACATGCGTCCGGTTGCTTCACTCAGGGGCCAGGCTAAAAGCGCAATCAAACCGATGAGTACAGCTGTGACAAAGGGATGCCAGCGTTTTTCAAACAGAATATGAGCGATCCCGGTTCGGCGCGGCGGTAAGGTCGCGACTTTGAGTTTTGGCTTCTTCAACTCTTTCATCACCACCCAGAGCGTTATC  >  NC_000913/2084778‑2085040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A