Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,618,225 T→C E184E (GAA→GAG)  hda ← inibitor of reinitiation of DNA replication

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,618,2250TC100.0% 229.3 / NA 63E184E (GAA→GAG) hdainibitor of reinitiation of DNA replication
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/30);  total (33/30)

TTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGTTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGATTCAACTGCCGC  >  NC_000913/2618090‑2618357
                                                                                                                                       |                                                                                                                                    
ttctttcACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCaa                                                                                                                                  <  1:108894/140‑1 (MQ=255)
  ctttcACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCaaaa                                                                                                                                <  2:644287/140‑1 (MQ=255)
    ttcACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAAcc                                                                                                                              >  1:114592/1‑140 (MQ=255)
          aaCGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCaa                                                                                                                        >  2:1237322/1‑140 (MQ=255)
              gAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAAcgc                                                                                                                    <  2:15753/140‑1 (MQ=255)
              gAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAAcgc                                                                                                                    <  1:766842/140‑1 (MQ=255)
               aaTGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAAcgcg                                                                                                                   >  1:416396/1‑140 (MQ=255)
                  ggTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAAcgcgcgc                                                                                                                <  1:1011629/140‑1 (MQ=255)
                         ttACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTg                                                                                                         >  1:1283521/1‑140 (MQ=255)
                           aCGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTTTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTa                                                                                                       <  2:918213/140‑1 (MQ=255)
                             gTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTa                                                                                                       >  2:489731/1‑138 (MQ=255)
                             gTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTa                                                                                                       <  1:489731/138‑1 (MQ=255)
                             gTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAgc                                                                                                     >  1:753670/1‑140 (MQ=255)
                                  gcgGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTg                                                                                                >  2:488930/1‑140 (MQ=255)
                                  gcgGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTg                                                                                                <  1:94413/140‑1 (MQ=255)
                                  gcgGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTg                                                                                                >  1:521775/1‑140 (MQ=255)
                                                aCGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTtcat                                                                                  >  2:610341/1‑140 (MQ=255)
                                                            aTCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCt                                                                                      >  2:974396/1‑124 (MQ=255)
                                                            aTCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCt                                                                                      <  1:974396/124‑1 (MQ=255)
                                                            aTCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCt                                                                      >  2:284215/1‑140 (MQ=255)
                                                            aTCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCt                                                                      <  1:393854/140‑1 (MQ=255)
                                                             tCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTg                                                                     <  1:1023861/140‑1 (MQ=255)
                                                              ccAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCt                                                                      >  2:1153625/1‑138 (MQ=255)
                                                              ccAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCt                                                                      <  1:1153625/138‑1 (MQ=255)
                                                              ccAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGc                                                                    >  1:881565/1‑140 (MQ=255)
                                                              ccAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGc                                                                    >  1:1188922/1‑140 (MQ=255)
                                                               cAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCa                                                                   <  1:439571/140‑1 (MQ=255)
                                                               cAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCa                                                                   <  2:753670/140‑1 (MQ=255)
                                                                  cGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCa                                                                   >  2:1084178/1‑137 (MQ=255)
                                                                  cGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCa                                                                   <  1:1084178/137‑1 (MQ=255)
                                                                   gTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAAttt                                                               >  2:33372/1‑140 (MQ=255)
                                                                       tAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAg                                                           >  1:2425/1‑140 (MQ=255)
                                                                            aGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACACGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTg                                                      >  2:818772/1‑140 (MQ=255)
                                                                              cGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcc                                                    >  2:700714/1‑140 (MQ=255)
                                                                              cGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcc                                                    >  1:551894/1‑140 (MQ=255)
                                                                              cGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcc                                                    >  1:1356914/1‑140 (MQ=255)
                                                                              cGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcc                                                    >  1:140698/1‑140 (MQ=255)
                                                                                tGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcccc                                                  <  1:1237322/140‑1 (MQ=255)
                                                                                tGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcccc                                                  >  2:43522/1‑140 (MQ=255)
                                                                                tGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcccc                                                  >  1:669695/1‑140 (MQ=255)
                                                                                tGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGcccc                                                  >  1:401908/1‑140 (MQ=255)
                                                                                            tGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgc                                      <  1:463624/140‑1 (MQ=255)
                                                                                            tGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACACGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgc                                      <  1:818772/140‑1 (MQ=255)
                                                                                               cGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgac                                   >  2:373130/1‑140 (MQ=255)
                                                                                                 aGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgacgc                                 >  2:86134/1‑140 (MQ=255)
                                                                                                 aGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgacgc                                 >  2:1282481/1‑140 (MQ=255)
                                                                                                  gCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgacgcg                                <  1:1282481/140‑1 (MQ=255)
                                                                                                  gCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgacgcg                                <  2:551894/140‑1 (MQ=255)
                                                                                                  gCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgacgcg                                <  2:669695/140‑1 (MQ=255)
                                                                                                   ccGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgacgcga                               <  1:284215/140‑1 (MQ=255)
                                                                                                   ccGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgacgcga                               >  2:711610/1‑140 (MQ=255)
                                                                                                   ccGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgac                                   >  2:883222/1‑136 (MQ=255)
                                                                                                   ccGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTcgcgac                                   <  1:883222/136‑1 (MQ=255)
                                                                                                    cGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCgag                              <  1:700714/140‑1 (MQ=255)
                                                                                                      cTTCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGAt                            <  2:416396/140‑1 (MQ=255)
                                                                                                        tCAGCAAGAAACGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATcc                          <  1:610341/140‑1 (MQ=255)
                                                                                                                  aCGCCCCACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCa                <  1:711610/140‑1 (MQ=255)
                                                                                                                     ccccACATCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGAt             >  2:1121360/1‑140 (MQ=255)
                                                                                                                         acaTCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGATTCaa         <  1:488930/140‑1 (MQ=255)
                                                                                                                          caTCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGATTCAAc        <  1:460565/140‑1 (MQ=255)
                                                                                                                           aTCTTCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGATTCAACt       >  1:1000001/1‑140 (MQ=255)
                                                                                                                               tCCGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGATTCAACTGCcg   <  2:140698/140‑1 (MQ=255)
                                                                                                                                ccGGCAGCTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGATTCAACTGCcgc  >  1:252636/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                    
TTCTTTCACAAACGGAATGGTCAGCTTACGTTGCGCGGTAATCGACGCACGATCCAACTGATCCAACGTCATAAATAGCGTGCGCATTTCTCTGTCGAGCCGCTTCAGCAAGAAACGCCCCACATCTTCCGGCAGTTCAAAACCACGCAAACGCGCGCGTAACTGTAGCGCCTGCAACTTATCTTCATCAGAAAGTGGCTGCAATTTGTAGATCTGCCCCCAGTCGAGTCGCGACGCGAGATCCGGTAATCCCAGATTCAACTGCCGC  >  NC_000913/2618090‑2618357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A