Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	116	49.4	1663006	99.2%	1649701	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,051,365	T→C	V2143A (GTA→GCA)	yeeJ →	inverse autotransporter adhesin

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,051,365	0	T	C	100.0%	267.3 / NA	71	V2143A (GTA→GCA)	yeeJ	inverse autotransporter adhesin
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (32/39); total (32/39)

ATGGAATTTGTGCAATCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGTATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGCAGGGGTTCACC  >  NC_000913/2051232‑2051501

aTGGAATTTGTGCAATCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGaa                                                                                                                                    <  1:552626/140‑1 (MQ=255)

aTGGAATTTGTGCAATCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGaa                                                                                                                                    <  1:639908/140‑1 (MQ=255)

   gAATTTGTGCAATCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATgg                                                                                                                                 <  2:479734/140‑1 (MQ=255)

         gtgCAATCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTtca                                                                                                                           >  1:425958/1‑140 (MQ=255)

              aTCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAg                                                                                                                      >  2:15195/1‑140 (MQ=255)

              aTCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAg                                                                                                                      <  1:452690/140‑1 (MQ=255)

                 aGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTg                                                                                                                   >  1:25763/1‑140 (MQ=255)

                   gTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGt                                                                                                                 <  1:277354/140‑1 (MQ=255)

                   gTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGt                                                                                                                 <  1:357464/140‑1 (MQ=255)

                      cTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCATTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTg                                                                                                              <  2:260734/140‑1 (MQ=255)

                         aCGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAgc                                                                                                           >  2:175196/1‑139 (MQ=255)

                         aCGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGt                                                                                                           >  2:74442/1‑140 (MQ=255)

                         aCGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGt                                                                                                           >  2:448201/1‑140 (MQ=255)

                         aCGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGt                                                                                                           >  2:327039/1‑140 (MQ=255)

                            tGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTAcc                                                                                                        >  2:379041/1‑140 (MQ=255)

                             gCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACca                                                                                                       >  1:816258/1‑140 (MQ=255)

                             gCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACca                                                                                                       >  2:15471/1‑140 (MQ=255)

                             gCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACca                                                                                                       <  2:758890/140‑1 (MQ=255)

                             gCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACca                                                                                                       >  1:388704/1‑140 (MQ=255)

                             gCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACca                                                                                                       >  2:735507/1‑140 (MQ=255)

                              cccTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACcac                                                                                                      >  2:428930/1‑140 (MQ=255)

                              cccTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACcac                                                                                                      >  2:341257/1‑140 (MQ=255)

                              cccTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACcac                                                                                                      >  1:32403/1‑140 (MQ=255)

                                   tataAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCacaatac                                                                                                 >  1:89131/1‑140 (MQ=255)

                                   tataAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCacaatac                                                                                                 >  1:741206/1‑140 (MQ=255)

                                            tAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTc                                                                                        <  2:25763/140‑1 (MQ=255)

                                             aGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTcg                                                                                       >  1:548105/1‑140 (MQ=255)

                                               cgcAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTcgcg                                                                                     <  1:15471/140‑1 (MQ=255)

                                                 cAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACATGAGGCGGAGTGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCa                                                                                   <  2:741206/140‑1 (MQ=255)

                                                 cAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCa                                                                                   <  1:341257/140‑1 (MQ=255)

                                                 cAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCa                                                                                   <  2:711323/140‑1 (MQ=255)

                                                    ttGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCagaa                                                                                <  1:428930/140‑1 (MQ=255)

                                                    ttGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCagaa                                                                                >  1:559425/1‑140 (MQ=255)

                                                              tCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAaataa                                                                      >  1:643383/1‑140 (MQ=255)

                                                               cTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAaataat                                                                     <  2:32403/140‑1 (MQ=255)

                                                               cTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAaataat                                                                     <  1:448201/140‑1 (MQ=255)

                                                                 aaaTATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGa                                                                   >  1:436225/1‑140 (MQ=255)

                                                                  aaTATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAg                                                                  <  2:436225/140‑1 (MQ=255)

                                                                  aaTATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAg                                                                  <  2:388704/140‑1 (MQ=255)

                                                                  aaTATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAg                                                                  <  2:89131/140‑1 (MQ=255)

                                                                   atatCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGc                                                                 <  1:444857/140‑1 (MQ=255)

                                                                       cAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTa                                                             <  1:15195/140‑1 (MQ=255)

                                                                        aaCGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAg                                                                  <  1:81475/134‑1 (MQ=255)

                                                                        aaCGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAg                                                                  >  2:81475/1‑134 (MQ=255)

                                                                        aaCGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAg                                                                  >  2:354591/1‑134 (MQ=255)

                                                                        aaCGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAg                                                                  <  1:354591/134‑1 (MQ=255)

                                                                             tGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTAt                                                       <  1:735507/140‑1 (MQ=255)

                                                                             tGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTAt                                                       <  2:643383/140‑1 (MQ=255)

                                                                             tGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTAt                                                       <  1:327039/140‑1 (MQ=255)

                                                                             tGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGAAt                                                       <  1:295860/140‑1 (MQ=255)

                                                                                          aCTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTAc                                          >  2:2360/1‑140 (MQ=255)

                                                                                              ttACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGAc                                      <  1:379041/140‑1 (MQ=255)

                                                                                                 cAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTa                                   <  1:74442/140‑1 (MQ=255)

                                                                                                 cAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTa                                   <  2:548105/140‑1 (MQ=255)

                                                                                                      ggCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTAc                                  <  2:460084/136‑1 (MQ=255)

                                                                                                      ggCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTAc                                  >  1:460084/1‑136 (MQ=255)

                                                                                                      ggCGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGAc                              >  2:669679/1‑140 (MQ=255)

                                                                                                        cGGAGAGGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACaa                            >  2:518217/1‑140 (MQ=255)

                                                                                                           agagGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTa                         >  1:295467/1‑140 (MQ=255)

                                                                                                           agagGGTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTa                         >  1:223675/1‑140 (MQ=255)

                                                                                                              gggTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACaa                            >  2:600118/1‑134 (MQ=255)

                                                                                                              gggTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACaa                            <  1:600118/134‑1 (MQ=255)

                                                                                                              gggTATCGCAACGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACAt                      <  2:295467/140‑1 (MQ=255)

                                                                                                                       aaCGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGc             <  2:559425/140‑1 (MQ=255)

                                                                                                                        aCGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGCa            <  2:816258/140‑1 (MQ=255)

                                                                                                                         cGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGCAg           >  1:275573/1‑140 (MQ=255)

                                                                                                                         cGCTGATCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGCAg           <  2:275573/140‑1 (MQ=255)

                                                                                                                               tCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCg              >  2:121897/1‑131 (MQ=255)

                                                                                                                               tCCCTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCg              <  1:121897/131‑1 (MQ=255)

                                                                                                                                cccTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGCAGGGGTTCa    <  1:2360/140‑1 (MQ=255)

                                                                                                                                  cTGCATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGCAGGGGTTCAcc  <  1:175196/140‑1 (MQ=255)

ATGGAATTTGTGCAATCAGGTACTAACGTGCCCTATATAAAAATTAGCGCAATTGATTACAGTCTAAATATCAACGGTGATTACAAAGCCACTGTTACAGGAGGCGGAGAGGGTATCGCAACGCTGATCCCTGTATTGAATGGTGTTCATCAAGCTGGTCTGAGTACCACAATACAATTCACTCGCGCAGAAGACAAAATAATGAGCGGTACAGTATCAGTCAATGGTACTGACCTACCGACAACTACATTCCCTTCGCAGGGGTTCACC  >  NC_000913/2051232‑2051501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A