Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	143	98.3	3330986	99.3%	3307669	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,915,005	T→C	H177R (CAC→CGC)	proQ ←	RNA chaperone ProQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,915,005	0	T	C	100.0%	302.3 / NA	86	H177R (CAC→CGC)	proQ	RNA chaperone ProQ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (51/35); total (51/35)

ACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGTGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTGCGTCT  >  NC_000913/1914875‑1915139

aCCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACTCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGttctt                                                                                                                               >  2:1159136/1‑140 (MQ=255)

aCCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGttctt                                                                                                                               >  1:777116/1‑140 (MQ=255)

aCCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGttctt                                                                                                                               >  2:1424986/1‑140 (MQ=255)

aCCCGAATTCAACTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGttctt                                                                                                                               >  2:206135/1‑140 (MQ=255)

     aaTTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGa                                                                                                                          <  1:863120/140‑1 (MQ=255)

      aTTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAg                                                                                                                         <  1:1424986/140‑1 (MQ=255)

               gacgcggacgcCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTa                                                                                                                >  2:719572/1‑140 (MQ=255)

               gacgcggacgcCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGCGCGCTGTTCTTCGCGAGGTGCTTTTa                                                                                                                >  1:377937/1‑140 (MQ=255)

                 cgcggacgcCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACt                                                                                                              >  1:187594/1‑140 (MQ=255)

                      acgcCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGtttt                                                                                                         >  1:1385163/1‑140 (MQ=255)

                         ccGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTgg                                                                                                      >  1:1375274/1‑140 (MQ=255)

                         ccGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTgg                                                                                                      <  2:1375274/140‑1 (MQ=255)

                          cGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGgc                                                                                                     >  1:411776/1‑140 (MQ=255)

                          cGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGgc                                                                                                     >  1:1032722/1‑140 (MQ=255)

                          cGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTCACTGTTTTTGgc                                                                                                     <  2:777116/140‑1 (MQ=255)

                           gTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGgcg                                                                                                    <  2:1385163/140‑1 (MQ=255)

                              tttGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGGCCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCtt                                                                                                 <  1:1075952/140‑1 (MQ=255)

                              tttGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCtt                                                                                                 >  2:630915/1‑140 (MQ=255)

                                      tttCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTAcc                                                                                         >  2:16497/1‑140 (MQ=255)

                                      tttCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTAcc                                                                                         >  2:476916/1‑140 (MQ=255)

                                      tttCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTAcc                                                                                         >  1:1163501/1‑140 (MQ=255)

                                       ttCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCg                                                                                        >  2:96971/1‑140 (MQ=255)

                                          tAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCt                                                                                     >  2:755335/1‑140 (MQ=255)

                                             tACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCtttt                                                                                  <  2:187594/140‑1 (MQ=255)

                                               cGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTgc                                                                                >  2:631824/1‑140 (MQ=255)

                                                 gTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTgcgc                                                                              >  2:1102171/1‑140 (MQ=255)

                                                 gTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTgcgc                                                                              >  1:1587080/1‑140 (MQ=255)

                                                  tGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCa                                                                             >  2:1153110/1‑140 (MQ=255)

                                                  tGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCa                                                                             >  2:282177/1‑140 (MQ=255)

                                                  tGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCa                                                                             >  2:81436/1‑140 (MQ=255)

                                                  tGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCa                                                                             <  2:1032722/140‑1 (MQ=255)

                                                  tGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCa                                                                             >  2:36108/1‑140 (MQ=255)

                                                   ggCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGGTTTCTCTCCAGGCTTTTGCacac                                                                            <  2:377937/140‑1 (MQ=255)

                                                   ggCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTgcg                                                                               >  1:1376875/1‑137 (MQ=255)

                                                   ggCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTgcg                                                                               <  2:1376875/137‑1 (MQ=255)

                                                   ggCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCAc                                                                            <  1:476916/140‑1 (MQ=255)

                                                   ggCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCAc                                                                            >  2:278848/1‑140 (MQ=255)

                                                   ggCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCAc                                                                            >  1:1104443/1‑140 (MQ=255)

                                                    gCATCCATCGCGTNTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGTCTTTTGCGCACg                                                                           >  1:1364371/1‑140 (MQ=255)

                                                     catccatcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGa                                                                          <  1:719572/140‑1 (MQ=255)

                                                       tccatcGCGTTTTGACCCGCTTTCACCTTTAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAgg                                                                        >  1:164227/1‑140 (MQ=255)

                                                       tccatcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCAc                                                                            <  2:1181507/136‑1 (MQ=255)

                                                       tccatcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCAc                                                                            >  1:1181507/1‑136 (MQ=255)

                                                       tccatcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAgg                                                                        >  2:1137185/1‑140 (MQ=255)

                                                       tccatcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAgg                                                                        >  2:1133021/1‑140 (MQ=255)

                                                        ccatcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGt                                                                       <  1:1133021/140‑1 (MQ=255)

                                                          atcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGttt                                                                     >  2:1074633/1‑140 (MQ=255)

                                                           tcGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTa                                                                    <  2:1282833/140‑1 (MQ=255)

                                                            cgcgTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTAc                                                                   >  2:135987/1‑140 (MQ=255)

                                                              cgTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGt                                                                 >  1:743629/1‑140 (MQ=255)

                                                                  ttGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAg                                                             <  1:282177/140‑1 (MQ=255)

                                                                             tCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTg                                                  <  1:1368408/140‑1 (MQ=255)

                                                                                  tttaGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTgcggcg                                             <  2:164227/137‑1 (MQ=255)

                                                                                  ttCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTgcggcg                                             <  1:1102171/140‑1 (MQ=255)

                                                                                     aGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCggcgtgg                                          >  1:1239969/1‑140 (MQ=255)

                                                                                         cTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTa                                      >  1:332854/1‑140 (MQ=255)

                                                                                         cTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTa                                      >  2:33601/1‑140 (MQ=255)

                                                                                           tGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGt                                    <  2:743629/140‑1 (MQ=255)

                                                                                            gTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTc                                   >  2:1043067/1‑140 (MQ=255)

                                                                                               cGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGa                                <  1:630915/140‑1 (MQ=255)

                                                                                                 aCAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACg                              <  1:1140452/140‑1 (MQ=255)

                                                                                                 aCAGTCAGAGCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACg                              <  1:81436/140‑1 (MQ=255)

                                                                                                 aCAGTCAGAGCTGAAATATCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACg                              >  1:132936/1‑140 (MQ=255)

                                                                                                       agagCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGAc                               <  1:546159/133‑1 (MQ=255)

                                                                                                       agagCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGAc                               >  2:546159/1‑133 (MQ=255)

                                                                                                       agagCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCtt                        >  2:1027803/1‑140 (MQ=255)

                                                                                                       agagCTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCtt                        >  1:1198409/1‑140 (MQ=255)

                                                                                                           cTGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGt                    <  2:1198409/140‑1 (MQ=255)

                                                                                                            tGAAATGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGtt                   >  1:622926/1‑140 (MQ=255)

                                                                                                              aaaTGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcg                 >  2:145878/1‑140 (MQ=255)

                                                                                                              aaaTGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcg                 >  2:1102389/1‑140 (MQ=255)

                                                                                                               aaTGTCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcgc                >  2:1038783/1‑140 (MQ=255)

                                                                                                                   tCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcgcggcg            <  1:1102389/140‑1 (MQ=255)

                                                                                                                   tCAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcgcggcg            >  1:630514/1‑140 (MQ=255)

                                                                                                                    cAGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcgcggcgc           <  2:622926/140‑1 (MQ=255)

                                                                                                                     aGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcgcggcgcg          <  1:1074633/140‑1 (MQ=255)

                                                                                                                     aGAAACCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTcgcggcgcg          <  1:33601/140‑1 (MQ=255)

                                                                                                                       aaaCCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGt        <  2:1239969/140‑1 (MQ=255)

                                                                                                                        aaCCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTg       >  2:100376/1‑140 (MQ=255)

                                                                                                                        aaCCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTCTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTg       <  1:278848/140‑1 (MQ=255)

                                                                                                                         aCCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGt        <  2:1643751/138‑1 (MQ=255)

                                                                                                                         aCCGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGt        >  1:1643751/1‑138 (MQ=255)

                                                                                                                          ccGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTGCg     >  2:17168/1‑140 (MQ=255)

                                                                                                                           cGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTGCGt    <  2:332854/140‑1 (MQ=255)

                                                                                                                           cGGGGTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTGCGt    <  1:17168/140‑1 (MQ=255)

                                                                                                                            ggggTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTGCGtc   <  2:132936/140‑1 (MQ=255)

                                                                                                                             gggTGCGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTGCGtct  <  1:1153110/140‑1 (MQ=255)

ACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCTGAAATGTCAGAAACCGGGGTGTGCTGTTCTTCGCGAGGTGCTTTTACTGTTTTTGGCGCTTTCTCTACCGGCTTTTGCGCACGAGGTTTACGTTCAGCGCCTTCTTTGCGGCGTGGCGTAGTCGGACGTGGCTTGCGTTCGCGGCGCGGTGCGTCT  >  NC_000913/1914875‑1915139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A