Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	143	98.3	3330986	99.3%	3307669	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,413,425	G→A	intergenic (‑293/‑45)	yfbV ← / → ackA	UPF0208 membrane protein YfbV/acetate kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,413,425	0	G	A	100.0%	450.7 / NA	126	intergenic (‑293/‑45)	yfbV/ackA	UPF0208 membrane protein YfbV/acetate kinase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (56/70); total (56/70)

Only 100 of 126 total aligned reads displayed.

TATACATTATGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGGCTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTACCTTT  >  NC_000913/2413292‑2413560

tataCATTATGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCt                                                                                                                                   <  1:704350/140‑1 (MQ=255)

 ataCATTATGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTg                                                                                                                                  >  2:87230/1‑140 (MQ=255)

     aTTATGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGt                                                                                                                              >  1:1274097/1‑140 (MQ=255)

       tATGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGttt                                                                                                                            >  1:1097914/1‑140 (MQ=255)

         tGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGttttt                                                                                                                          >  1:504964/1‑140 (MQ=255)

         tGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGttttt                                                                                                                          >  1:646/1‑140 (MQ=255)

         tGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGttttt                                                                                                                          >  2:1142467/1‑140 (MQ=255)

         tGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGttttt                                                                                                                          >  1:1632293/1‑140 (MQ=255)

         tGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGttttt                                                                                                                          >  1:1632069/1‑140 (MQ=255)

         tGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGttttt                                                                                                                          >  2:151283/1‑140 (MQ=255)

              ttGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGa                                                                                                                                 <  1:622569/128‑1 (MQ=255)

              ttGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGc                                                                                                                     >  2:820518/1‑140 (MQ=255)

              ttGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGc                                                                                                                     >  2:511215/1‑140 (MQ=255)

              ttGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCACAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGc                                                                                                                     <  2:531964/140‑1 (MQ=255)

               tGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGcc                                                                                                                    >  1:58365/1‑140 (MQ=255)

               tGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGcc                                                                                                                    >  1:1596158/1‑140 (MQ=255)

               tGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGcc                                                                                                                    >  1:1114625/1‑140 (MQ=255)

                 gCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCAc                                                                                                                  <  2:818324/140‑1 (MQ=255)

                   tGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGt                                                                                                                <  2:1599229/140‑1 (MQ=255)

                    gAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTa                                                                                                               <  2:1632069/140‑1 (MQ=255)

                    gAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTa                                                                                                               <  2:1097914/140‑1 (MQ=255)

                    gAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTa                                                                                                               <  2:758268/140‑1 (MQ=255)

                    gAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTa                                                                                                               <  2:1448323/140‑1 (MQ=255)

                     aaaaTTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTa                                                                                                               <  2:133936/139‑1 (MQ=255)

                     aaaaTTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTAt                                                                                                              <  2:1432458/140‑1 (MQ=255)

                     aaaaTTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTAt                                                                                                              <  2:1130493/140‑1 (MQ=255)

                     aaaaTTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTAt                                                                                                              <  1:1142467/140‑1 (MQ=255)

                          tACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAAtt                                                                                                         <  2:1632293/140‑1 (MQ=255)

                           aCGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATta                                                                                                        >  1:947783/1‑140 (MQ=255)

                            cGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATtat                                                                                                       <  2:1084696/140‑1 (MQ=255)

                               aaaaTGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTAt                                                                                                              <  2:140975/130‑1 (MQ=255)

                               aaaaTGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTAt                                                                                                              >  1:140975/1‑130 (MQ=255)

                               aaaaTGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAgg                                                                                                    <  1:239682/140‑1 (MQ=255)

                               aaaaTGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAgg                                                                                                    <  1:1217423/140‑1 (MQ=255)

                                      cATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATtat                                                                                                       <  2:1041593/130‑1 (MQ=255)

                                      cATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATtat                                                                                                       >  1:1041593/1‑130 (MQ=255)

                                         aGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATg                                                                                          <  1:511215/140‑1 (MQ=255)

                                               aaGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGt                                                                                    >  1:475620/1‑140 (MQ=255)

                                                    atTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGtt                                                                               >  2:1251488/1‑140 (MQ=255)

                                                     tttCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAg                                                                                     <  2:777458/133‑1 (MQ=255)

                                                     tttCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAg                                                                                     >  1:777458/1‑133 (MQ=255)

                                                         ttcCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTAc                                                                          <  2:58365/140‑1 (MQ=255)

                                                         ttcCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTAc                                                                          <  1:137797/140‑1 (MQ=255)

                                                          tcCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACt                                                                         >  1:668134/1‑140 (MQ=255)

                                                           ccATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTg                                                                        >  1:402252/1‑140 (MQ=255)

                                                           ccATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTg                                                                        >  2:1482088/1‑140 (MQ=255)

                                                              tcatGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGtt                                                                     >  1:967422/1‑140 (MQ=255)

                                                               catGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGt                                                                                >  1:1193334/1‑128 (MQ=255)

                                                               catGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGt                                                                                <  2:1193334/128‑1 (MQ=255)

                                                               catGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTc                                                                    >  2:686290/1‑140 (MQ=255)

                                                                 tGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGtt                                                                     <  2:331575/137‑1 (MQ=255)

                                                                 tGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGtt                                                                     >  1:331575/1‑137 (MQ=255)

                                                                 tGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTg                                                                  >  2:1496114/1‑140 (MQ=255)

                                                                 tGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTg                                                                  >  2:279969/1‑140 (MQ=255)

                                                                 tGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTg                                                                  >  2:1298632/1‑140 (MQ=255)

                                                                  gCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGa                                                                 >  2:842882/1‑140 (MQ=255)

                                                                   cAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGaa                                                                >  2:723746/1‑140 (MQ=255)

                                                                   cAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGaa                                                                <  1:820518/140‑1 (MQ=255)

                                                                    aaaaaaaaTTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAAc                                                               <  2:504964/140‑1 (MQ=255)

                                                                     aaaaaaaTTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACt                                                              >  2:56176/1‑140 (MQ=255)

                                                                         aaaTTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCgg                                                          <  2:602036/140‑1 (MQ=255)

                                                                           aTTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGACACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTa                                                        <  2:1274097/140‑1 (MQ=255)

                                                                              tGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGtt                                                     <  2:475620/140‑1 (MQ=255)

                                                                                     cATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACt                                              >  2:370740/1‑140 (MQ=255)

                                                                                             tAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTg                                      >  1:126205/1‑140 (MQ=255)

                                                                                             tAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTg                                      >  1:1497601/1‑140 (MQ=255)

                                                                                               aTCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGcc                                    <  2:668134/140‑1 (MQ=255)

                                                                                               aTCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGcc                                    <  1:1496114/140‑1 (MQ=255)

                                                                                               aTCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGcc                                    <  2:1176739/140‑1 (MQ=255)

                                                                                                    aaaTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGATGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCcatcat                               >  2:632178/1‑140 (MQ=255)

                                                                                                    aaaTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTGGTTCTTCACTGAAATTTGCcatcat                               >  1:1060421/1‑140 (MQ=255)

                                                                                                    aaaTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCcatcat                               >  1:310226/1‑140 (MQ=255)

                                                                                                    aaaTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCcat                                  <  2:582423/137‑1 (MQ=255)

                                                                                                      aTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCAc                                               >  1:222063/1‑122 (MQ=255)

                                                                                                      aTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCAc                                               <  2:222063/122‑1 (MQ=255)

                                                                                                      aTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCg                             <  2:402252/140‑1 (MQ=255)

                                                                                                      aTGTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCAACg                             >  1:1032742/1‑140 (MQ=255)

                                                                                                        gTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGAt                           <  2:310226/140‑1 (MQ=255)

                                                                                                        gTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGAt                           <  1:370740/140‑1 (MQ=255)

                                                                                                        gTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGAt                           <  2:867160/140‑1 (MQ=255)

                                                                                                        gTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGAt                           <  1:1637189/140‑1 (MQ=255)

                                                                                                        gTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGAt                           <  1:1485897/140‑1 (MQ=255)

                                                                                                        gTCGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGAt                           <  1:1482088/140‑1 (MQ=255)

                                                                                                          cGGTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGc                         <  1:1390166/140‑1 (MQ=255)

                                                                                                           ggTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCa                        >  1:864230/1‑140 (MQ=255)

                                                                                                           ggTGTCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCa                        <  1:1018636/140‑1 (MQ=255)

                                                                                                             tgtCATCATGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGt                      <  1:56176/140‑1 (MQ=255)

                                                                                                                catcatGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTaaa                   <  2:1497601/140‑1 (MQ=255)

                                                                                                                     tGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTg              <  1:89673/140‑1 (MQ=255)

                                                                                                                     tGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTg              <  2:1060421/140‑1 (MQ=255)

                                                                                                                     tGCGCTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTg              <  1:1251488/140‑1 (MQ=255)

                                                                                                                       cgcTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGaa            <  1:723746/140‑1 (MQ=255)

                                                                                                                       cgcTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTAAAATTTGCCATCATCGATGc                         <  2:1447337/127‑1 (MQ=255)

                                                                                                                       cgcTACGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTAAAATTTGCCATCATCGATGc                         >  1:1447337/1‑127 (MQ=255)

                                                                                                                            cGCTCTATGACTCCCTGATGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTa       <  1:632178/140‑1 (MQ=255)

                                                                                                                            cGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTa       >  2:2826/1‑140 (MQ=255)

                                                                                                                            cGCTCTATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTa       >  2:371643/1‑140 (MQ=255)

                                                                                                                                ctATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTACCtt   <  1:371643/140‑1 (MQ=255)

                                                                                                                                 tATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTACCttt  <  1:842882/140‑1 (MQ=255)

                                                                                                                                 tATGACTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTACCttt  <  1:686290/140‑1 (MQ=255)

TATACATTATGCCATTGGCTGAAAATTACGCAAAATGGCATAGACTCAAGATATTTCTTCCATCATGCAAAAAAAATTTGCAGTGCATGATGTTAATCATAAATGTCGGTGTCATCATGCGCTACGCTCTATGGCTCCCTGACGTTTTTTTAGCCACGTATCAATTATAGGTACTTCCATGTCGAGTAAGTTAGTACTGGTTCTGAACTGCGGTAGTTCTTCACTGAAATTTGCCATCATCGATGCAGTAAATGGTGAAGAGTACCTTT  >  NC_000913/2413292‑2413560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A