Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
143 |
98.3 |
3330986 |
99.3% |
3307669 |
138.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
2,720,852 |
Δ5 bp |
coding (900‑904/2661 nt) |
patZ → |
peptidyl‑lysine acetyltransferase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
2720852 |
2720856 |
5 |
92 [0] |
[0] 93 |
patZ |
peptidyl‑lysine acetyltransferase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2720851 | 0 (0.000) | 92 (0.940) |
58/274 |
0.3 |
100% |
coding (899/2661 nt) |
patZ |
peptidyl‑lysine acetyltransferase |
| ? | NC_000913 |
2720857 = |
0 (0.000) | coding (905/2661 nt) |
patZ |
peptidyl‑lysine acetyltransferase |
GATK/CNVnator alignment
N/A
