Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,702,242	A→G	T4A (ACC→GCC)	add →	adenosine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,702,242	0	A	G	100.0%	134.5 / NA	40	T4A (ACC→GCC)	add	adenosine deaminase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/25); total (15/25)

CGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTCCCCACGTTCAGG  >  NC_000913/1702108‑1702377

cGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATgccacc                                                                                                                                    <  2:315201/140‑1 (MQ=255)

cGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATgccacc                                                                                                                                    >  1:187461/1‑140 (MQ=255)

cGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATgccacc                                                                                                                                    >  2:796829/1‑140 (MQ=255)

     tCCGCGCTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGcc                                                                                                                               >  1:783779/1‑140 (MQ=255)

        gcgcTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCAtt                                                                                                                            <  2:732141/140‑1 (MQ=255)

          gcTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTaa                                                                                                                          <  2:113870/140‑1 (MQ=255)

           cTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAAc                                                                                                                         >  1:749220/1‑140 (MQ=255)

              ttCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGa                                                                                                                      >  1:523793/1‑140 (MQ=255)

              ttCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGa                                                                                                                      >  2:271185/1‑140 (MQ=255)

                               cgcAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTg                                                                                                     >  1:657540/1‑140 (MQ=255)

                                 cAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGAt                                                                                                   >  2:475363/1‑140 (MQ=255)

                                   aCGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATgg                                                                                                 <  1:271185/140‑1 (MQ=255)

                                    cGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGc                                                                                                >  1:902618/1‑140 (MQ=255)

                                          aaaTCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACAtt                                                                                          <  1:777227/140‑1 (MQ=255)

                                          aaaTCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACAtt                                                                                          <  1:397448/140‑1 (MQ=255)

                                          aaaTCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACAtt                                                                                          <  2:92210/140‑1 (MQ=255)

                                              cGTTGCGCAGTCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTc                                                                                      >  1:109145/1‑140 (MQ=255)

                                                ttGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTccc                                                                                    <  2:187461/140‑1 (MQ=255)

                                                     cAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGAc                                                                               <  2:926556/140‑1 (MQ=255)

                                                                  ttACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACtt                                                                  >  2:931494/1‑140 (MQ=255)

                                                                       cTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGgccg                                                             <  2:657540/140‑1 (MQ=255)

                                                                        tGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGgccgc                                                            <  2:987277/140‑1 (MQ=255)

                                                                        tGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGgccgc                                                            <  1:796829/140‑1 (MQ=255)

                                                                        tGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGgccgc                                                            <  2:783779/140‑1 (MQ=255)

                                                                        tGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGgccgc                                                            <  2:956521/140‑1 (MQ=255)

                                                                        tGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGgccgc                                                            <  2:749220/140‑1 (MQ=255)

                                                                                      aaTGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATAtctc                                              <  2:578889/140‑1 (MQ=255)

                                                                                             cgcACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCt                                       >  2:786403/1‑140 (MQ=255)

                                                                                              gcACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTg                                      >  2:1166373/1‑140 (MQ=255)

                                                                                              gcACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTg                                      >  2:525129/1‑140 (MQ=255)

                                                                                                  ttttATATCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGcaca                                  <  2:523793/140‑1 (MQ=255)

                                                                                                     tataTCCAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATc                               <  2:631649/140‑1 (MQ=255)

                                                                                                          ccAGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTgg                          >  1:752671/1‑140 (MQ=255)

                                                                                                           cAGAAAAAGAGTGCTACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGa                         <  1:948469/140‑1 (MQ=255)

                                                                                                            aGAAAAAGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGaa                        >  2:407334/1‑140 (MQ=255)

                                                                                                               aaaaGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAaca                     <  1:931494/140‑1 (MQ=255)

                                                                                                                aaaGAGTGCGACCATGATTGATGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAacac                    >  1:795715/1‑140 (MQ=255)

                                                                                                                             aTGATTGATGCCA‑CCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTCCCCACGtt      <  2:520826/140‑1 (MQ=255)

                                                                                                                              tgattgatGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTCCCCACGtt      <  2:795715/140‑1 (MQ=255)

                                                                                                                                 ttgatGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTCCCCACGTTCAg   <  1:1166373/140‑1 (MQ=255)

                                                                                                                                 ttgatGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTCCCCACGTTCAg   <  2:752671/140‑1 (MQ=255)

                                                                                                                                  tgatGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTCCCCACGTTCAgg  <  2:902618/140‑1 (MQ=255)

                                                                                                                                   gatGCCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTcccc           <  2:370788/130‑1 (MQ=255)

CGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGTAAAAAATCGTTGCGCAATCGTGGATTTTTACCCTGCTTTGTTTTTATAATGGTGCGCACTTTTATATCCAGAAAAAGAGTGCGACCATGATTGATACCACCCTGCCATTAACTGATATCCATCGCCACCTTGATGGCAACATTCGTCCCCAGACCATTCTTGAACTTGGCCGCCAGTATAATATCTCGCTTCCTGCACAATCCCTGGAAACACTGATTCCCCACGTTCAGG  >  NC_000913/1702108‑1702377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A