Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F28 I1 R1
|
228 |
65.7 |
2434974 |
91.7% |
2232871 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,914,439 |
A→G |
R126R (CGT→CGC) |
prc ← |
tail‑specific protease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,914,439 | 0 | A | G | 100.0%
| 201.3
/ NA
| 57 | R126R (CGT→CGC) | prc | tail‑specific protease |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/22); total (35/22) |
ACTTTACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAACGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCCAGCAGCACGTTGT > NC_000913/1914308‑1914572
|
aCTTTACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCaaa > 1:109924/1‑140 (MQ=255)
tACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACgg < 1:35530/140‑1 (MQ=255)
tCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCtt > 2:887027/1‑140 (MQ=255)
tCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCtt > 2:772571/1‑140 (MQ=255)
cccACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCttt > 2:1062200/1‑140 (MQ=255)
caGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTgcg < 1:1124343/140‑1 (MQ=255)
caGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTgcg > 2:231349/1‑140 (MQ=255)
caGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTgcg < 1:843479/140‑1 (MQ=255)
gcgcGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGcc > 1:1122761/1‑140 (MQ=255)
cgcgTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCa < 1:772571/140‑1 (MQ=255)
cgTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGa > 2:1025506/1‑140 (MQ=255)
gTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGAt < 1:1025506/140‑1 (MQ=255)
ttCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTgcg > 2:495943/1‑133 (MQ=255)
ttCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTgcg < 1:495943/133‑1 (MQ=255)
aCTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTag < 2:900039/140‑1 (MQ=255)
tCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTagag > 1:64151/1‑140 (MQ=255)
aGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGAt > 1:246262/1‑140 (MQ=255)
tttttCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGaa > 2:403946/1‑140 (MQ=255)
ttCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCACTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAAc > 1:318172/1‑140 (MQ=255)
gggCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGtt < 2:246262/140‑1 (MQ=255)
gggCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGtt > 1:657940/1‑140 (MQ=255)
gggCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGtt > 2:533771/1‑140 (MQ=255)
gggCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGtt < 1:887027/140‑1 (MQ=255)
gcgcTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCAACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTg > 1:708107/1‑140 (MQ=255)
tgcGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGc > 2:639569/1‑140 (MQ=255)
cGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCGGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAg > 2:631623/1‑140 (MQ=255)
gTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGtt > 2:587485/1‑140 (MQ=255)
cAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCa < 2:639907/140‑1 (MQ=255)
cAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCa < 1:587485/140‑1 (MQ=255)
aaGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGc > 1:433349/1‑125 (MQ=255)
aaGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGc < 2:433349/125‑1 (MQ=255)
taAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTaa > 2:731639/1‑140 (MQ=255)
gtgtCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTc > 2:1018748/1‑140 (MQ=255)
gtCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCgg > 2:116640/1‑140 (MQ=255)
tCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGt < 2:64151/140‑1 (MQ=255)
tCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGt > 2:817052/1‑140 (MQ=255)
tCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGt > 2:87082/1‑140 (MQ=255)
tCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGt > 2:263162/1‑140 (MQ=255)
ggTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCtttt > 2:953820/1‑140 (MQ=255)
tGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTc < 1:87082/140‑1 (MQ=255)
aaTCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTcgcg < 1:403946/140‑1 (MQ=255)
aaTCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTcgcg < 1:231349/140‑1 (MQ=255)
tCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGaa < 1:731639/140‑1 (MQ=255)
cGGCTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGtt > 1:552212/1‑140 (MQ=255)
cTTTTCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCaa < 1:1018748/140‑1 (MQ=255)
ttCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACAt < 2:109924/140‑1 (MQ=255)
tCCAGTACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATc > 1:608355/1‑140 (MQ=255)
tACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTg > 2:339804/1‑140 (MQ=255)
tACCGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTg > 1:422930/1‑140 (MQ=255)
ccGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGcc > 2:930403/1‑140 (MQ=255)
ccGACAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTCTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGcc < 1:1062200/140‑1 (MQ=255)
aCAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCcagc > 2:498759/1‑140 (MQ=255)
aCAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCcagc < 2:628006/140‑1 (MQ=255)
aCAAAGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCcagc > 2:758559/1‑140 (MQ=255)
aGCGTACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCCAgcagca > 2:113399/1‑140 (MQ=255)
tACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCCAGCAGCACGtt > 1:489131/1‑140 (MQ=255)
tACTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCCAGCAGCACGtt < 1:953820/140‑1 (MQ=255)
cTGGTAGCGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCCAGCAGCACGTtgt > 1:1000364/1‑140 (MQ=255)
|
ACTTTACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAACGCTCAAAACGGCGCTTTTGCGCCAGATTGTAGAGATCGTAGAAAACGTCGAGTTTGCCTGAACGCAGTTCATCGCCTAACTCGGTTTTCTTTTTCGCGAACTGTTCAACATCGCTTGCCAGCAGCACGTTGT > NC_000913/1914308‑1914572
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
