Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,083,073	T→C	R106R (CGT→CGC)	sbcB →	exodeoxyribonuclease I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,083,073	0	T	C	100.0%	168.2 / NA	48	R106R (CGT→CGC)	sbcB	exodeoxyribonuclease I
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (23/25); total (23/25)

CAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGA  >  NC_000913/2082937‑2083208

cagGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTc                                                                                                                                      <  1:1078618/140‑1 (MQ=255)

            taattaCCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTc                                                                                                                          <  2:665011/140‑1 (MQ=255)

                 aCCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACg                                                                                                                     <  1:1182929/140‑1 (MQ=255)

                 aCCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACg                                                                                                                     <  1:732864/140‑1 (MQ=255)

                   cGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCa                                                                                                                   <  2:269290/140‑1 (MQ=255)

                   cGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCa                                                                                                                   <  2:778407/140‑1 (MQ=255)

                     gTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAAc                                                                                                                 >  2:262765/1‑140 (MQ=255)

                          aCCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACAtttt                                                                                                            >  2:1060158/1‑140 (MQ=255)

                              cGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTAt                                                                                                        <  1:340725/140‑1 (MQ=255)

                              cGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTAt                                                                                                        >  2:617293/1‑140 (MQ=255)

                              cGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTAt                                                                                                        >  2:1000507/1‑140 (MQ=255)

                                cAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCg                                                                                                      >  2:697118/1‑140 (MQ=255)

                                cAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCg                                                                                                      >  1:488617/1‑140 (MQ=255)

                                cAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCg                                                                                                      >  1:723688/1‑140 (MQ=255)

                                cAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCg                                                                                                      >  2:990366/1‑140 (MQ=255)

                                   gAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTaa                                                                                                   <  2:488617/140‑1 (MQ=255)

                                     aGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAAtt                                                                                                 >  2:630040/1‑140 (MQ=255)

                                       cACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTAt                                                                                                        >  1:312554/1‑131 (MQ=255)

                                       cACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTAt                                                                                                        <  2:312554/131‑1 (MQ=255)

                                           ggCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACg                                                                                           >  1:716561/1‑140 (MQ=255)

                                                aaGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCt                                                                                      <  2:275121/140‑1 (MQ=255)

                                                     gaAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGc                                                                                 <  1:697118/140‑1 (MQ=255)

                                                      aaaaCGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGcc                                                                                >  2:276747/1‑140 (MQ=255)

                                                             aGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCt                                                                         <  1:630040/140‑1 (MQ=255)

                                                             aGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCt                                                                         >  2:1029842/1‑140 (MQ=255)

                                                                 gcgTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGgca                                                                     <  1:990366/140‑1 (MQ=255)

                                                                            ccGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACt                                                          <  1:1000507/140‑1 (MQ=255)

                                                                                      tCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACt                                                          >  1:187067/1‑130 (MQ=255)

                                                                                      tCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACt                                                          <  2:187067/130‑1 (MQ=255)

                                                                                      tCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGa                                                <  1:276747/140‑1 (MQ=255)

                                                                                       cGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGAt                                               <  1:332606/140‑1 (MQ=255)

                                                                                           ttttACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTAc                                           <  1:507137/140‑1 (MQ=255)

                                                                                                      cgAAGACCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATg                                <  1:1060158/140‑1 (MQ=255)

                                                                                                           aCCTGTATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGc                           <  1:1028130/140‑1 (MQ=255)

                                                                                                                tATTCTGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGtt                      >  1:1116743/1‑140 (MQ=255)

                                                                                                                     tGGGCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGcc                 >  1:330113/1‑140 (MQ=255)

                                                                                                                       ggCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCt               >  2:377261/1‑140 (MQ=255)

                                                                                                                       ggCTACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCt               <  2:723688/140‑1 (MQ=255)

                                                                                                                          tACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGc                           <  2:1052984/125‑1 (MQ=255)

                                                                                                                          tACAACAATGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGc                           >  1:1052984/1‑125 (MQ=255)

                                                                                                                            caacaaTGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGcc          >  1:873430/1‑140 (MQ=255)

                                                                                                                            caacaaTGTGCGCTTCGACGACCAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGcc          >  1:945504/1‑140 (MQ=255)

                                                                                                                               caaTGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCgg       <  1:964256/140‑1 (MQ=255)

                                                                                                                                aaTGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCgga      <  1:578997/140‑1 (MQ=255)

                                                                                                                                 aTGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTgcgc           <  2:464077/134‑1 (MQ=255)

                                                                                                                                 aTGTGCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTgcgc           >  1:464077/1‑134 (MQ=255)

                                                                                                                                  tgtgCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGATATGCGTGCCTGTTATGCCCTGCGCCCggaag    >  2:103498/1‑140 (MQ=255)

                                                                                                                                    tgCGCTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCggaagga  >  2:152377/1‑140 (MQ=255)

CAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGA  >  NC_000913/2082937‑2083208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A