Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 228 65.7 2434974 91.7% 2232871 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,245,248 T→C T508A (ACG→GCG)  cirA ← ferric dihyroxybenzoylserine outer membrane transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,245,2480TC100.0% 277.0 / NA 77T508A (ACG→GCG) cirAferric dihyroxybenzoylserine outer membrane transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/34);  total (43/34)

CGTTGTAGGTGTAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGTCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACC  >  NC_000913/2245113‑2245383
                                                                                                                                       |                                                                                                                                       
cGTTGTAGGTGTAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCa                                                                                                                                     >  2:219502/1‑140 (MQ=255)
 gTTGTAGGTGTAGTTGATCGACAGTTTCCATTCATCGTTAAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCaa                                                                                                                                    >  1:553561/1‑140 (MQ=255)
    gTAGGTGTAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAAc                                                                                                                                 >  1:1192001/1‑140 (MQ=255)
      aGGTGTAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACca                                                                                                                               <  2:905393/140‑1 (MQ=255)
       ggTGTAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCaaa                                                                                                                                   >  2:116629/1‑135 (MQ=255)
       ggTGTAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCaaa                                                                                                                                   <  1:116629/135‑1 (MQ=255)
         tgtAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACcaaca                                                                                                                            >  1:793990/1‑140 (MQ=255)
            aGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAg                                                                                                                         >  1:408970/1‑140 (MQ=255)
                gATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGtttt                                                                                                                     >  1:956369/1‑140 (MQ=255)
                 aTCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACcaac                                                                                                                             >  1:1079465/1‑131 (MQ=255)
                 aTCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACcaac                                                                                                                             <  2:1079465/131‑1 (MQ=255)
                  tCGACAGTTTCCATTCATCGTTAAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTgg                                                                                                                   <  2:553561/140‑1 (MQ=255)
                   cGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGt                                                                                                                  >  2:127350/1‑140 (MQ=255)
                   cGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGt                                                                                                                  >  2:519628/1‑140 (MQ=255)
                     aCAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAg                                                                                                                >  2:1171829/1‑140 (MQ=255)
                           tCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGt                                                                                                          >  2:804078/1‑140 (MQ=255)
                              aTTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCa                                                                                                       <  1:1171829/140‑1 (MQ=255)
                                tCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGc                                                                                                     >  1:1152452/1‑140 (MQ=255)
                                 cATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCg                                                                                                    <  2:956369/140‑1 (MQ=255)
                                   tCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGtt                                                                                                  <  1:691674/140‑1 (MQ=255)
                                   tCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGtt                                                                                                  >  2:691674/1‑140 (MQ=255)
                                    cGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTg                                                                                                 >  1:230106/1‑140 (MQ=255)
                                     gTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGa                                                                                                >  2:104018/1‑140 (MQ=255)
                                      ttGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGAc                                                                                               >  1:1006176/1‑140 (MQ=255)
                                         aaCGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTc                                                                                            <  2:793990/140‑1 (MQ=255)
                                         aaCGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTc                                                                                            <  2:1006176/140‑1 (MQ=255)
                                          aCGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCa                                                                                           <  2:230106/140‑1 (MQ=255)
                                          aCGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCa                                                                                           >  1:414665/1‑140 (MQ=255)
                                           cGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAg                                                                                          >  1:607899/1‑140 (MQ=255)
                                              aaTTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACg                                                                                       <  2:415449/140‑1 (MQ=255)
                                              aaTTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACg                                                                                       >  1:231705/1‑140 (MQ=255)
                                                ttttCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTa                                                                                     >  1:884745/1‑140 (MQ=255)
                                                    cacttCGGTTTCCTCCCTGTGAATACGAGTTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGgc                                                                                 <  2:869643/137‑1 (MQ=255)
                                                     aGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGTGTTGACGTCAGACGTACGgct                                                                                <  2:1192001/140‑1 (MQ=255)
                                                         cGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGgctgatg                                                                            <  2:408970/140‑1 (MQ=255)
                                                         cGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGgctgatg                                                                            <  1:519628/140‑1 (MQ=255)
                                                            tttCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGgctgatgctg                                                                         <  2:280686/140‑1 (MQ=255)
                                                            tttCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGgctgatgctg                                                                         <  2:247124/140‑1 (MQ=255)
                                                               ccACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATa                                                                      <  1:219502/140‑1 (MQ=255)
                                                               ccACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATa                                                                      <  2:414665/140‑1 (MQ=255)
                                                               ccACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATa                                                                      <  1:127350/140‑1 (MQ=255)
                                                               ccACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATa                                                                      <  2:416441/140‑1 (MQ=255)
                                                                     ccTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCt                                                                >  1:519120/1‑140 (MQ=255)
                                                                      cTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCtt                                                               >  1:985513/1‑140 (MQ=255)
                                                                        gAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTc                                                             <  1:667779/140‑1 (MQ=255)
                                                                               aGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGt                                                      >  2:297764/1‑140 (MQ=255)
                                                                                 cTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTa                                                    >  1:1123015/1‑140 (MQ=255)
                                                                                   ttGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACg                                                  >  1:561575/1‑140 (MQ=255)
                                                                                   ttGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACg                                                  >  1:33596/1‑140 (MQ=255)
                                                                                            ttttagtagCTAAATCCGGGTAGGCGCCGCCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGt                                         <  2:607899/137‑1 (MQ=255)
                                                                                            ttGTAGTAGCTAAATACCGGCATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAG‑TTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTa                                        <  2:293323/140‑1 (MQ=255)
                                                                                              gtagtaGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTaa                                       >  1:809162/1‑140 (MQ=255)
                                                                                              gtagtaGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTaa                                       >  2:977720/1‑140 (MQ=255)
                                                                                                agtagCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACg                                     <  1:1142678/140‑1 (MQ=255)
                                                                                                  tagCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCt                                   <  2:809162/140‑1 (MQ=255)
                                                                                                     cTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGa                                >  1:597881/1‑140 (MQ=255)
                                                                                                       aaaTACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGAtt                              >  2:158241/1‑140 (MQ=255)
                                                                                                         aTACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAGCGGTAACGCt                                   >  2:1081333/1‑133 (MQ=255)
                                                                                                         aTACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCt                                   <  1:1081333/133‑1 (MQ=255)
                                                                                                         aTACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCa                            >  1:1108747/1‑140 (MQ=255)
                                                                                                         aTACCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCa                            >  1:135670/1‑140 (MQ=255)
                                                                                                           aCCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAAc                          <  2:1152452/140‑1 (MQ=255)
                                                                                                           aCCGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAAc                          <  1:977720/140‑1 (MQ=255)
                                                                                                            ccGGTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAAcc                         >  1:694291/1‑140 (MQ=255)
                                                                                                               gTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCt                      >  1:506953/1‑140 (MQ=255)
                                                                                                               gTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCt                      >  1:25301/1‑140 (MQ=255)
                                                                                                               gTATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCt                      >  2:749316/1‑140 (MQ=255)
                                                                                                               gTATGCGCCGTCCGTTAGCGCCCGCCTC‑AAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGa                                <  1:260632/129‑1 (MQ=255)
                                                                                                               gTATGCGCCGTCCGTTAGCGCCCGCCTC‑AAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGa                                >  2:260632/1‑129 (MQ=255)
                                                                                                                tATGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCtt                     >  1:934385/1‑140 (MQ=255)
                                                                                                                 aTGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTc                    <  1:104018/140‑1 (MQ=255)
                                                                                                                  tGCGCCGTCCGTTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTcc                   >  2:704056/1‑140 (MQ=255)
                                                                                                                         tccgtTAGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCcagccagc            <  2:1123015/140‑1 (MQ=255)
                                                                                                                               aGCGCCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCcttctt      <  2:985513/140‑1 (MQ=255)
                                                                                                                                 cgcccgccTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCa    <  1:704056/140‑1 (MQ=255)
                                                                                                                                  gcCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCAc   <  2:519120/140‑1 (MQ=255)
                                                                                                                                  gcCCGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCAc   <  1:158241/140‑1 (MQ=255)
                                                                                                                                   cccGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCAcc  >  1:898365/1‑140 (MQ=255)
                                                                                                                                   cccGCCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCAcc  >  1:1194614/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
CGTTGTAGGTGTAGTTGATCGACAGTTTCCATTCATCGTTGAACGGAATTTTCAGTTCGGTTTCCACGCCCTGAATACGAGCTTTGTTAACGTTGTAGTAGCTAAATACCGGTATGCGCCGTCCGTTAGCGCCCGTCTCAAAACCAACAAAGTTTTGGTAGCCCGGTGCAGCGTTGACGTCAGACGTACGGCTGATGCTGATACGATCTTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACC  >  NC_000913/2245113‑2245383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A