Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 228 65.7 2434974 91.7% 2232871 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,326,966 (C)6→7 coding (858/1185 nt) atoB → acetyl‑CoA acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,326,9601.C90.6% 205.4 / 13.5 64coding (852/1185 nt)atoBacetyl‑CoA acetyltransferase
Reads supporting (aligned to +/- strand):  ref base . (4/2);  new base C (35/23);  total (39/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01

AAGCAGGAACAGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTTGCTGCACAGTTCCTTGCCGTT  >  NC_000913/2326821‑2327089
                                                                                                                                            |                                                                                                                                   
aaGCAGGAACAGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTg                                                                                                                                      <  1:251209/140‑1 (MQ=255)
 aGCAGGAACAGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑c                                                                                                                                   >  2:963030/1‑140 (MQ=255)
        aCAGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑c‑ccccccg                                                                                                                           >  1:40883/1‑138 (MQ=255)
        aCAGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑c‑ccccccg                                                                                                                           >  1:159310/1‑138 (MQ=255)
          aGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGTGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑c‑ccccccgca                                                                                                                         <  1:1114671/140‑5 (MQ=255)
          aGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑c‑ccccccgca                                                                                                                         >  2:66042/1‑136 (MQ=255)
            tCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCAtt                                                                                                                        >  1:548770/1‑140 (MQ=255)
              aCCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGa                                                                                                                      >  2:1103267/1‑140 (MQ=255)
              aCCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGa                                                                                                                      <  1:14130/140‑1 (MQ=255)
                cGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATg                                                                                                                    >  2:746440/1‑140 (MQ=255)
                cGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATg                                                                                                                    <  2:159310/140‑1 (MQ=255)
                cGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATg                                                                                                                    <  2:40883/140‑1 (MQ=255)
                cGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑c‑cccc                                                                                                                              <  1:427887/129‑1 (MQ=255)
                cGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑c‑cccc                                                                                                                              >  2:427887/1‑129 (MQ=255)
                    gggAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTa                                                                                                                >  2:717057/1‑140 (MQ=255)
                    gggAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTa                                                                                                                >  2:876468/1‑140 (MQ=255)
                      gAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATg                                                                                                              >  2:546672/1‑140 (MQ=255)
                          gcgTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGc                                                                                                          <  2:139047/140‑1 (MQ=255)
                            gTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑C‑CCCCCGCATTGATGGGTATGGGGCCAg                                                                                                       >  2:560844/1‑140 (MQ=255)
                                        cgacgGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACg                                                                                            >  2:188498/1‑140 (MQ=255)
                                           cgGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaa                                                                                         >  1:836076/1‑140 (MQ=255)
                                           cgGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaa                                                                                         >  2:983893/1‑140 (MQ=255)
                                            ggTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCa                                                                                                        <  1:1000681/124‑1 (MQ=255)
                                            ggTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCa                                                                                                        >  2:1000681/1‑124 (MQ=255)
                                            ggTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaaa                                                                                        >  2:646796/1‑140 (MQ=255)
                                            ggTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaaa                                                                                        <  1:963030/140‑1 (MQ=255)
                                            ggTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaaa                                                                                        <  2:1046434/140‑1 (MQ=255)
                                            ggTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaaa                                                                                        <  1:188498/140‑1 (MQ=255)
                                             gTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaaaa                                                                                       <  2:836076/140‑1 (MQ=255)
                                              tgctgcCACTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑CACCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCaaaaa                                                                                      >  2:673711/1‑140 (MQ=255)
                                                        ctGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAAc                                                                            >  2:743221/1‑140 (MQ=255)
                                                        ctGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAAc                                                                            >  2:1922/1‑140 (MQ=255)
                                                                   ggAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTg                                                                 >  2:1078233/1‑140 (MQ=255)
                                                                     aagaaTCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCa                                                               >  2:3570/1‑140 (MQ=255)
                                                                     aagaaTCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCaa                                                              >  2:551994/1‑140 (MQ=255)
                                                                          tCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTgg                                                          >  1:152416/1‑140 (MQ=255)
                                                                          tCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTgg                                                          >  2:481252/1‑140 (MQ=255)
                                                                          tCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTgg                                                          >  2:376022/1‑140 (MQ=255)
                                                                          tCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTgg                                                          >  2:36136/1‑140 (MQ=255)
                                                                           cTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGc                                                         <  1:717057/140‑1 (MQ=255)
                                                                           cTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGc                                                         <  1:376022/140‑1 (MQ=255)
                                                                           cTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGc                                                         <  1:368526/140‑1 (MQ=255)
                                                                           cTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGc                                                         <  1:3570/140‑1 (MQ=255)
                                                                           cTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGc                                                         <  1:876468/140‑1 (MQ=255)
                                                                             gcggcgCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCgg                                                       <  1:1922/140‑1 (MQ=255)
                                                                             gcggcgCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑C‑CCCCCACATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCaa                                                              >  1:1033758/1‑132 (MQ=255)
                                                                             gcggcgCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑C‑CCCCCACATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCaa                                                              <  2:1033758/132‑1 (MQ=255)
                                                                                 cgcTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGatat                                                   <  1:746440/140‑1 (MQ=255)
                                                                                 cgcTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGatat                                                   <  1:646796/140‑1 (MQ=255)
                                                                                 cgcTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑CACCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGatat                                                   <  1:673711/140‑1 (MQ=255)
                                                                                    tGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGa                                                <  1:1103267/140‑1 (MQ=255)
                                                                                    tGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGa                                                <  2:548770/140‑1 (MQ=255)
                                                                                     ggCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCATGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGAt                                               <  2:1127169/140‑1 (MQ=255)
                                                                                             gCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGa                                       >  1:1098342/1‑140 (MQ=255)
                                                                                                    cccccTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAAt                                <  1:66042/140‑1 (MQ=255)
                                                                                                       ccTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGaa                             >  1:1080320/1‑140 (MQ=255)
                                                                                                         tGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTGCCC‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAg                            >  1:154576/1‑140 (MQ=255)
                                                                                                            cTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCAtt                        >  2:226231/1‑140 (MQ=255)
                                                                                                            cTCGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCAtt                        >  1:845590/1‑140 (MQ=255)
                                                                                                              cGCATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTtg                      >  2:486828/1‑140 (MQ=255)
                                                                                                                cATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTtgct                    >  2:589599/1‑140 (MQ=255)
                                                                                                                cATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTtgct                    >  1:843778/1‑140 (MQ=255)
                                                                                                                cATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTtgct                    >  2:1056236/1‑140 (MQ=255)
                                                                                                                cATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTtgct                    >  1:288748/1‑140 (MQ=255)
                                                                                                                cATTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCCGCAACTGGCGGGTATTTATCTCCTTGAGGGCAATGAAACATTttct                    >  2:607916/1‑140 (MQ=255)
                                                                                                                 aTTAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTtgctg                   >  1:117830/1‑140 (MQ=255)
                                                                                                                  ttAAAAGTTATGCCAGCGGAGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTtgctgc                  >  1:99215/1‑140 (MQ=255)
                                                                                                                   tAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTTGCTGca                 <  2:45424/140‑1 (MQ=255)
                                                                                                                   tAAAAGTTATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTTGCTGca                 <  1:743221/140‑1 (MQ=255)
                                                                                                                          tATGCCAGCGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTTGCTGCACAGTTcc          >  2:21495/1‑140 (MQ=255)
                                                                                                                                  cGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTTGCTGCACAGTTCCTTGCCGtt  >  1:123873/1‑140 (MQ=255)
                                                                                                                                  cGGTGGCGTGC‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTTGCTGCACAGTTCCTTGCCGtt  >  2:922053/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                   
AAGCAGGAACAGTCACCGCTGGGAACGCGTCTGGTATTAACGACGGTGCTGCCGCTCTGGTGATTATGGAAGAATCTGCGGCGCTGGCAGCAGGCCTTACCCCCCTGGCTCGCATTAAAAGTTATGCCAGCGGTGGCGTG‑‑C‑CCCCCGCATTGATGGGTATGGGGCCAGTACCTGCCACGCAAAAAGCGTTACAACTGGCGGGGCTGCAACTGGCGGATATTGATCTCATTGAGGCTAATGAAGCATTTGCTGCACAGTTCCTTGCCGTT  >  NC_000913/2326821‑2327089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A