Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	126	206.4	6980590	99.2%	6924745	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,324,560	Δ1 bp	coding (452/651 nt)	atoA →	acetyl‑CoA:acetoacetyl‑CoA transferase subunit beta

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,324,557	0	T	.	99.5%	888.9 / ‑2.3	211	coding (449/651 nt)	atoA	acetyl‑CoA:acetoacetyl‑CoA transferase subunit beta
Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (103/107); minor base A (1/0); total (104/107)
Fisher's exact test for biased strand distribution p-value = 4.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.84e-01

Only 100 of 227 total aligned reads displayed.

GACGAAGAAGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAATTTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGATTTAGCCACCGTG  >  NC_000913/2324418‑2324693

gACGAAGAAGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAAt                                                                                                                                          >  2:2883718/1‑140 (MQ=255)

   gaagaaGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAAtttg                                                                                                                                       <  2:2011445/140‑2 (MQ=255)

        agCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGcgccg                                                                                                                                 <  2:1843510/140‑1 (MQ=255)

        agCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGcgccg                                                                                                                                 <  1:2667381/140‑1 (MQ=255)

           aaaCCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTg                                                                                                                              <  1:723536/140‑1 (MQ=255)

             aCCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCa                                                                                                                            <  1:818529/140‑1 (MQ=255)

               cTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCAcc                                                                                                                          <  2:2493595/140‑1 (MQ=255)

                 cgcgAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAAtttg                                                                                                                                       >  2:197095/1‑125 (MQ=255)

                   cgAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGc                                                                                                                      >  1:1057371/1‑140 (MQ=255)

                   cgAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGc                                                                                                                      >  1:2682807/1‑140 (MQ=255)

                    gAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGcc                                                                                                                     <  2:877938/140‑1 (MQ=255)

                       cTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCcact                                                                                                                  <  1:2597236/140‑1 (MQ=255)

                       cTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCcact                                                                                                                  <  1:890893/140‑1 (MQ=255)

                       cTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCcact                                                                                                                  <  1:2414129/140‑1 (MQ=255)

                         gggTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCcactca                                                                                                                <  2:3163040/140‑1 (MQ=255)

                         gggTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGAAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCcactca                                                                                                                >  1:163649/1‑140 (MQ=255)

                           gTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCcactcact                                                                                                              <  1:1565144/140‑1 (MQ=255)

                               tGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTgcgc                                                                                                          >  1:3383321/1‑140 (MQ=255)

                               tGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTgcgc                                                                                                          <  1:1363139/140‑1 (MQ=255)

                                 ccTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCcactc                                                                                                                 <  1:544943/131‑1 (MQ=255)

                                 ccTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCaa                                                                                                        >  2:2643259/1‑140 (MQ=255)

                                 ccTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCaa                                                                                                        >  2:1479638/1‑140 (MQ=255)

                                    gggAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACAt                                                                                                     >  2:1189173/1‑140 (MQ=255)

                                    gggAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACAt                                                                                                     >  1:2199999/1‑140 (MQ=255)

                                    gggAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACAt                                                                                                     >  1:2637829/1‑140 (MQ=255)

                                      gAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGc                                                                                                   <  1:3469054/140‑1 (MQ=255)

                                      gAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGc                                                                                                   <  1:3249447/140‑1 (MQ=255)

                                      gAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGc                                                                                                   <  1:34875/140‑1 (MQ=255)

                                      gAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGc                                                                                                   <  2:97418/140‑1 (MQ=255)

                                      gAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGAAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGc                                                                                                   <  2:163649/140‑1 (MQ=255)

                                       aaaaTGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCg                                                                                                  <  2:2854322/140‑1 (MQ=255)

                                         aaTGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGt                                                                                                <  2:328118/140‑1 (MQ=255)

                                         aaTGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGt                                                                                                <  1:1483505/140‑1 (MQ=255)

                                         aaTGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGt                                                                                                >  1:2295158/1‑140 (MQ=255)

                                           tGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGc                                                                                              >  1:2074340/1‑140 (MQ=255)

                                               gCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCatat                                                                                          <  2:2834674/140‑1 (MQ=255)

                                                cccGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATg                                                                                         <  2:2739522/140‑1 (MQ=255)

                                                cccGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATg                                                                                         <  2:3383321/140‑1 (MQ=255)

                                                cccGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATg                                                                                         >  2:186966/1‑140 (MQ=255)

                                                cccGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATg                                                                                         >  1:1436102/1‑140 (MQ=255)

                                                  cGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCt                                                                                       <  1:2911140/140‑1 (MQ=255)

                                                  cGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCt                                                                                       <  1:186966/140‑1 (MQ=255)

                                                          gTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTgg                                                                                     <  2:1074754/134‑1 (MQ=255)

                                                             gcgcGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAAc                                                                            >  2:2373847/1‑140 (MQ=255)

                                                             gcgcGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAAc                                                                            >  2:303402/1‑140 (MQ=255)

                                                             gcgcGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCAGTGCATATGCTGGTTAc                                                                                 <  2:903735/135‑1 (MQ=255)

                                                              cgcgATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGtt                                                                                   >  1:2803251/1‑132 (MQ=255)

                                                              cgcgATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGtt                                                                                   <  2:2803251/132‑1 (MQ=255)

                                                              cgcgATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACt                                                                           >  1:1590170/1‑140 (MQ=255)

                                                               gcgATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTg                                                                          >  2:279189/1‑140 (MQ=255)

                                                                   tGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTg                                                                      >  1:118174/1‑140 (MQ=255)

                                                                      aTCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCt                                                                   <  2:2620904/140‑1 (MQ=255)

                                                                       tCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCtt                                                                  <  1:2828785/140‑1 (MQ=255)

                                                                       tCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCtt                                                                  <  2:2295158/140‑1 (MQ=255)

                                                                         tGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTc                                                                <  1:2523199/140‑1 (MQ=255)

                                                                             gACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGttt                                                            >  2:1880920/1‑140 (MQ=255)

                                                                                cGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCtt                                                                  <  1:932679/131‑1 (MQ=255)

                                                                                cGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTAt                                                         >  2:1548089/1‑140 (MQ=255)

                                                                                cGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTAt                                                         >  2:65288/1‑140 (MQ=255)

                                                                                cGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTAt                                                         >  2:584348/1‑140 (MQ=255)

                                                                                  ggTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCt                                                                       <  2:2048136/124‑1 (MQ=255)

                                                                                  ggTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTg                                                       >  1:3399943/1‑140 (MQ=255)

                                                                                   gTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGa                                                      >  1:1915788/1‑140 (MQ=255)

                                                                                     cgcgCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGa                                                      <  1:1381198/138‑1 (MQ=255)

                                                                                     cgcgCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGa                                                      >  2:1381198/1‑138 (MQ=255)

                                                                                            aGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGa                                                      >  2:1364684/1‑131 (MQ=255)

                                                                                              tGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAAtgt                                           >  1:2363004/1‑140 (MQ=255)

                                                                                                   atcGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTc                                      <  1:2456239/140‑1 (MQ=255)

                                                                                                    tcGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCa                                     >  2:2925978/1‑140 (MQ=255)

                                                                                                     cGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCAc                                    >  2:2138276/1‑140 (MQ=255)

                                                                                                      gCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCAcc                                   >  2:1991150/1‑140 (MQ=255)

                                                                                                      gCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCAcc                                   >  2:1289261/1‑140 (MQ=255)

                                                                                                      gCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCAcc                                   >  1:3445809/1‑140 (MQ=255)

                                                                                                      gCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGATGGTTACTGAACTGGCTGCCTTTCGTTTTATTGACGCCAAAATGCGGCTTAcc                                   >  2:3065371/1‑140 (MQ=255)

                                                                                                            gAACATTGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAAtt                             >  2:386560/1‑140 (MQ=255)

                                                                                                                 ttGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGa                        <  2:3399943/140‑1 (MQ=255)

                                                                                                                 ttGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGa                        <  2:20227/140‑1 (MQ=255)

                                                                                                                 ttGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGa                        <  1:3288736/140‑1 (MQ=255)

                                                                                                                 ttGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGa                        <  1:2138276/140‑1 (MQ=255)

                                                                                                                  tGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAGTGTGGCTCACCGAAATTGCCGAc                       >  1:2862442/1‑140 (MQ=255)

                                                                                                                  tGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGAc                       >  1:180981/1‑140 (MQ=255)

                                                                                                                  tGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGAc                       >  1:1202640/1‑140 (MQ=255)

                                                                                                                  tGCGCCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGAc                       >  1:2766406/1‑140 (MQ=255)

                                                                                                                     gcCAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACggg                    <  1:2846846/140‑1 (MQ=255)

                                                                                                                      ccAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  2:2766406/140‑1 (MQ=255)

                                                                                                                      ccAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  1:3203991/140‑1 (MQ=255)

                                                                                                                      ccAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  1:2016059/140‑1 (MQ=255)

                                                                                                                      ccAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  2:2630578/140‑1 (MQ=255)

                                                                                                                      ccAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  2:2420040/140‑1 (MQ=255)

                                                                                                                      ccAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  2:414797/140‑1 (MQ=255)

                                                                                                                      ccAAAGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  2:2119947/140‑1 (MQ=255)

                                                                                                                          aGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGa               <  1:412876/140‑1 (MQ=255)

                                                                                                                          aGATGGTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAACGTGGCTCACCGAAATTGCCGACGGGTGTGa               <  1:2060836/140‑1 (MQ=255)

                                                                                                                              ggTTCAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGATTTa           <  1:2925978/140‑1 (MQ=255)

                                                                                                                                  cAGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGATTTAGCCa       <  1:1548089/140‑1 (MQ=255)

                                                                                                                                   aGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   <  1:1417372/127‑1 (MQ=255)

                                                                                                                                   aGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGgt                   >  2:1417372/1‑127 (MQ=255)

                                                                                                                                   aGCAAAAA‑TTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGATTTAGCCAc      >  1:988897/1‑140 (MQ=255)

                                                                                                                                        aaaaTTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGATTTAGCCACcgtg  <  2:3445809/140‑1 (MQ=255)

                                                                                                                                        aaaaTTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGATTTAGCCACcgtg  <  2:2167516/140‑1 (MQ=255)

GACGAAGAAGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGCGCGATGGATCTGGTGACCGGGTCGCGCAAAGTGATCATCGCCATGGAACATTGCGCCAAAGATGGTTCAGCAAAAATTTTGCGCCGCTGCACCATGCCACTCACTGCGCAACATGCGGTGCATATGCTGGTTACTGAACTGGCTGTCTTTCGTTTTATTGACGGCAAAATGTGGCTCACCGAAATTGCCGACGGGTGTGATTTAGCCACCGTG  >  NC_000913/2324418‑2324693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A