Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	126	206.4	6980590	99.2%	6924745	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,892,397	T→C	F62L (TTT→CTT)	queD →	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,892,397	0	T	C	100.0%	791.5 / NA	217	F62L (TTT→CTT)	queD	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (113/104); total (113/104)

Only 100 of 218 total aligned reads displayed.

CTTACCACACGTCCCGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGTTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGA  >  NC_000913/2892264‑2892532

cTTACCACACGTCCCGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAaac                                                                                                                                   <  1:3190191/140‑1 (MQ=255)

        acGTCCCGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTAc                                                                                                                           >  2:1284151/1‑140 (MQ=255)

          gTCCCGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGa                                                                                                                         >  2:3419371/1‑140 (MQ=255)

            cccGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAgc                                                                                                                       >  2:839002/1‑140 (MQ=255)

            cccGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCCTTATGGTGCGACTGGAAATTACCGGGGTAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAaac                                                                                                                                   >  2:2190443/1‑128 (MQ=255)

            cccGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCCTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAaac                                                                                                                                   <  1:2190443/128‑1 (MQ=255)

            cccGGAAGGGCATAAATGCGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTAc                                                                                                                           >  2:2198175/1‑136 (MQ=255)

             ccGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAgcg                                                                                                                      >  1:559158/1‑140 (MQ=255)

               ggAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAaac                                                                                                                                   >  1:430689/1‑125 (MQ=255)

               ggAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGcc                                                                                                                    <  2:1071024/140‑1 (MQ=255)

               ggAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGcc                                                                                                                    <  1:2101608/140‑1 (MQ=255)

                   gggCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGa                                                                                                                <  2:1692040/140‑1 (MQ=255)

                   gggCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGa                                                                                                                <  2:1331122/140‑1 (MQ=255)

                   gggCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGa                                                                                                                <  1:1284151/140‑1 (MQ=255)

                    ggCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               <  1:26833/140‑1 (MQ=255)

                    ggCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               <  1:157709/140‑1 (MQ=255)

                    ggCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               >  1:1528635/1‑140 (MQ=255)

                    ggCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               <  1:1375303/140‑1 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAgcg                                                                                                                      <  1:284480/131‑1 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGcc                                                                                                                    >  1:2299636/1‑133 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               >  2:2832657/1‑138 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCa                                                                                                             >  2:959429/1‑140 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCa                                                                                                             >  1:1760507/1‑140 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCa                                                                                                             >  2:1003378/1‑140 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCa                                                                                                             >  2:3348707/1‑140 (MQ=255)

                      cATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCa                                                                                                             >  1:1675935/1‑140 (MQ=255)

                        tAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTGAAACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCAc                                                                                                            <  1:2564682/140‑1 (MQ=255)

                        tAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCAcc                                                                                                           <  1:2645657/140‑1 (MQ=255)

                          aaTGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCAt                                                                                                         <  1:684269/140‑1 (MQ=255)

                           aTGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               >  2:3489885/1‑133 (MQ=255)

                           aTGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               <  1:3489885/133‑1 (MQ=255)

                           aTGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCAtt                                                                                                        <  2:559158/140‑1 (MQ=255)

                           aTGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCAtt                                                                                                        <  2:2417892/140‑1 (MQ=255)

                               ggTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTAtct                                                                                                    <  1:96340/140‑1 (MQ=255)

                               ggTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTAtct                                                                                                    >  1:776288/1‑140 (MQ=255)

                               ggTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTAtct                                                                                                    <  1:1751306/140‑1 (MQ=255)

                                gTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑GACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGAt                                                                                                               >  1:827146/1‑128 (MQ=255)

                                gTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTAtctc                                                                                                   >  1:2023640/1‑140 (MQ=255)

                                gTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTAtctc                                                                                                   >  1:2413528/1‑140 (MQ=255)

                                 tCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCa                                                                                                  <  2:43100/140‑1 (MQ=255)

                                   gCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGa                                                                                                                >  1:99042/1‑124 (MQ=255)

                                    ccTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTAtct                                                                                                    <  2:2556666/135‑1 (MQ=255)

                                     cTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGa                                                                                              >  2:1687615/1‑140 (MQ=255)

                                     cTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGa                                                                                              <  1:2068305/140‑1 (MQ=255)

                                          cGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTc                                                                                         <  1:1118301/140‑1 (MQ=255)

                                          cGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTc                                                                                         <  1:1186728/140‑1 (MQ=255)

                                          cGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTc                                                                                         <  1:34038/140‑1 (MQ=255)

                                          cGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTc                                                                                         <  2:2180345/140‑1 (MQ=255)

                                               aTTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGt                                                                                    <  2:1675935/140‑1 (MQ=255)

                                                  ccTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTg                                                                                 >  1:1360224/1‑140 (MQ=255)

                                                  ccTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGAACCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAAt                                                                                                >  1:2990851/1‑125 (MQ=255)

                                                       aTGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGaaaa                                                                            >  2:2150228/1‑140 (MQ=255)

                                                           tGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑GACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCa                                                                        >  1:3287520/1‑140 (MQ=255)

                                                           tGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCa                                                                        >  1:1139832/1‑140 (MQ=255)

                                                           tGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCa                                                                        >  2:2597809/1‑140 (MQ=255)

                                                             cGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAg                                                                                      <  1:1808410/124‑1 (MQ=255)

                                                             cGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGTAAAACCCAAc                                                                      >  1:103122/1‑140 (MQ=255)

                                                             cGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAAc                                                                      >  1:1845978/1‑140 (MQ=255)

                                                             cGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAAc                                                                      >  2:196527/1‑140 (MQ=255)

                                                             cGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAAc                                                                      >  2:1725700/1‑140 (MQ=255)

                                                             cGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAAc                                                                      <  2:1556740/140‑1 (MQ=255)

                                                             cGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAAc                                                                      >  1:1556740/1‑140 (MQ=255)

                                                                  ggAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCg                                                                 <  2:2367562/140‑1 (MQ=255)

                                                                  ggAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCg                                                                 <  2:2731973/140‑1 (MQ=255)

                                                                        tACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGttt                                                           <  1:2451275/140‑1 (MQ=255)

                                                                         aCCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGtttt                                                          <  1:3351748/140‑1 (MQ=255)

                                                                                aaGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCaaaa                                                   <  2:2023640/140‑1 (MQ=255)

                                                                                  gTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATg                                                 <  2:1139832/140‑1 (MQ=255)

                                                                                   tCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATgg                                                >  2:1116449/1‑140 (MQ=255)

                                                                                       tCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGAttt                                            >  1:1598721/1‑140 (MQ=255)

                                                                                            aTACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       <  2:420461/140‑1 (MQ=255)

                                                                                            aTACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       <  1:3419371/140‑1 (MQ=255)

                                                                                            aTACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       <  1:3090358/140‑1 (MQ=255)

                                                                                            aTACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       <  1:288321/140‑1 (MQ=255)

                                                                                             tACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATc                                      >  1:2485884/1‑140 (MQ=255)

                                                                                             tACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATc                                      <  1:2741440/140‑1 (MQ=255)

                                                                                                gggCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       >  2:1824294/1‑136 (MQ=255)

                                                                                                   cTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       <  1:887174/133‑1 (MQ=255)

                                                                                                   cTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       >  2:887174/1‑133 (MQ=255)

                                                                                                           tCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTGCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGtt                        >  2:733492/1‑140 (MQ=255)

                                                                                                           tCGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGAt                                       >  2:3000173/1‑125 (MQ=255)

                                                                                                            cGATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTtg                       >  2:3223916/1‑140 (MQ=255)

                                                                                                             gATTTCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTtgt                      >  2:1385535/1‑140 (MQ=255)

                                                                                                                ttCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGcc                   >  2:3263125/1‑140 (MQ=255)

                                                                                                                ttCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGcc                   >  1:2370404/1‑140 (MQ=255)

                                                                                                                ttCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGcc                   >  2:492248/1‑140 (MQ=255)

                                                                                                                ttCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGcc                   >  1:1763066/1‑140 (MQ=255)

                                                                                                                ttCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGcc                   >  2:1779436/1‑140 (MQ=255)

                                                                                                                ttCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGcc                   >  1:389725/1‑140 (MQ=255)

                                                                                                                 tCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCg                  <  1:717821/140‑1 (MQ=255)

                                                                                                                 tCGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCg                  <  2:2507693/140‑1 (MQ=255)

                                                                                                                  cGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTtgtg                     >  2:2932228/1‑136 (MQ=255)

                                                                                                                  cGCTG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGc                 >  1:303239/1‑140 (MQ=255)

                                                                                                                     tG‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGt              <  2:1918440/140‑1 (MQ=255)

                                                                                                                      g‑AACTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGtt             <  2:795905/140‑1 (MQ=255)

                                                                                                                          cTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTtgtg                     >  1:2030155/1‑129 (MQ=255)

                                                                                                                          cTAAAAGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTtgtg                     <  2:2030155/129‑1 (MQ=255)

                                                                                                                              aaGCGGCGCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCg      <  2:1371357/140‑1 (MQ=255)

                                                                                                                                 cggcgCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTg   <  1:2150228/140‑1 (MQ=255)

                                                                                                                                 cggcgCTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTg   <  1:492248/140‑1 (MQ=255)

CTTACCACACGTCCCGGAAGGGCATAAATGTGGTCGCCTGCACGGGCATTCCTTTATGGTGCGACTGGAAATTACCGGGGAAGTCGATCCGCATACGGGCTGGATTATCGATTTCGCTG‑AACTAAAAGCGGCGTTTAAACCAACCTACGAGCGCCTCGATCACCATTATCTCAATGATATTCCAGGTCTGGAAAACCCAACCAGCGAGGTTTTAGCAAAATGGATTTGGGATCAGGTTAAACCCGTTGTGCCGCTGTTAAGTGCGGTGA  >  NC_000913/2892264‑2892532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A