Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 126 206.4 6980590 99.2% 6924745 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,892,643 A→G intergenic (+64/‑14) queD → / → ygcN 6‑carboxy‑5,6,7,8‑tetrahydropterin synthase/putative oxidoreductase with FAD/NAD(P)‑binding domain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,892,6430AG100.0% 680.6 / NA 188intergenic (+64/‑14)queD/ygcN6‑carboxy‑5,6,7,8‑tetrahydropterin synthase/putative oxidoreductase with FAD/NAD(P)‑binding domain
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (100/88);  total (100/88)

Only 100 of 189 total aligned reads displayed.

CCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAG  >  NC_000913/2892506‑2892778
                                                                                                                                         |                                                                                                                                       
ccGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTc                                                                                                                                       <  1:1523725/140‑1 (MQ=255)
 cGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCt                                                                                                                                      <  2:421823/140‑1 (MQ=255)
  gTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTg                                                                                                                                     <  1:2402374/140‑1 (MQ=255)
   ttGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgg                                                                                                                                    >  1:2063513/1‑140 (MQ=255)
   ttGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgg                                                                                                                                    >  2:1647123/1‑140 (MQ=255)
   ttGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgg                                                                                                                                    >  2:179571/1‑140 (MQ=255)
   ttGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgg                                                                                                                                    >  1:3083332/1‑140 (MQ=255)
   ttGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgg                                                                                                                                    >  1:142978/1‑140 (MQ=255)
   ttGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgg                                                                                                                                    >  2:589761/1‑140 (MQ=255)
   ttGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgg                                                                                                                                    >  1:1114288/1‑140 (MQ=255)
    tgtgCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTggg                                                                                                                                   <  2:3265544/140‑1 (MQ=255)
    tgtgCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTggg                                                                                                                                   <  1:959273/140‑1 (MQ=255)
     gtgCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgggg                                                                                                                                  <  1:2547295/140‑1 (MQ=255)
      tgCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGc                                                                                                                                 <  1:589761/140‑1 (MQ=255)
      tgCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGc                                                                                                                                 <  1:792348/140‑1 (MQ=255)
       gCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCa                                                                                                                                <  1:1973961/140‑1 (MQ=255)
        ccGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTgggg                                                                                                                                  <  1:1985674/137‑1 (MQ=255)
        ccGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCAt                                                                                                                               <  1:1725700/140‑1 (MQ=255)
        ccGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGCTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCAt                                                                                                                               <  2:841853/140‑1 (MQ=255)
          gCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGa                                                                                                                             >  1:2460562/1‑140 (MQ=255)
           cTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGAc                                                                                                                            >  2:2845763/1‑140 (MQ=255)
            tGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACa                                                                                                                           <  1:1647123/140‑1 (MQ=255)
                aaGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCAt                                                                                                                               <  2:2353095/132‑1 (MQ=255)
                        tGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGc                                                                                                                                 <  1:3295300/122‑1 (MQ=255)
                        tGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGc                                                                                                                                 >  2:3295300/1‑122 (MQ=255)
                        tGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACt                                                                                                               >  1:1014738/1‑140 (MQ=255)
                        tGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACt                                                                                                               >  2:3368388/1‑140 (MQ=255)
                         gATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTg                                                                                                              <  2:3083332/140‑1 (MQ=255)
                           tGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCg                                                                                                            <  1:1378453/140‑1 (MQ=255)
                            ggTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGa                                                                                                           <  1:3440206/140‑1 (MQ=255)
                            ggTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGa                                                                                                           <  2:1490164/140‑1 (MQ=255)
                            ggTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGa                                                                                                           <  2:1845978/140‑1 (MQ=255)
                            ggTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGa                                                                                                           <  2:2205459/140‑1 (MQ=255)
                            ggTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGa                                                                                                           <  1:1025107/140‑1 (MQ=255)
                             gTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGAc                                                                                                          <  1:3368388/140‑1 (MQ=255)
                             gTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGAc                                                                                                          <  2:365751/140‑1 (MQ=255)
                              tAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACa                                                                                                         <  2:2708697/140‑1 (MQ=255)
                              tAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACa                                                                                                         <  2:1290059/140‑1 (MQ=255)
                              tAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACa                                                                                                         <  2:2064638/140‑1 (MQ=255)
                              tAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCACTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACa                                                                                                         <  1:1668843/140‑1 (MQ=255)
                               aaaaGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACat                                                                                                        <  2:162947/140‑1 (MQ=255)
                               aaaaGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACat                                                                                                        <  1:2845763/140‑1 (MQ=255)
                               aaaaGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACat                                                                                                        <  2:103122/140‑1 (MQ=255)
                                aaaGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACatt                                                                                                       <  2:1114288/140‑1 (MQ=255)
                                    aaaCCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACattattt                                                                                                   >  2:1944201/1‑139 (MQ=255)
                                     aaCCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACattattat                                                                                                  >  1:1454682/1‑140 (MQ=255)
                                      aCCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGa                                                                                                           >  1:2019982/1‑130 (MQ=255)
                                      aCCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGa                                                                                                           <  2:2019982/130‑1 (MQ=255)
                                      aCCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACattattatt                                                                                                 >  1:593037/1‑140 (MQ=255)
                                         tGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACattattattatt                                                                                              <  2:668390/140‑1 (MQ=255)
                                          gCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTTAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACatt                                                                                                       >  1:498692/1‑130 (MQ=255)
                                           cACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTg                                                                                                              >  1:685756/1‑122 (MQ=255)
                                           cACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTg                                                                                                              <  2:685756/122‑1 (MQ=255)
                                                    ttGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTAt                                                                                   <  2:1014738/140‑1 (MQ=255)
                                                     tGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTAtt                                                                                  >  2:1732465/1‑140 (MQ=255)
                                                       tatctatcGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGc                                                                                >  1:7638/1‑140 (MQ=255)
                                                       tatctatcGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGc                                                                                >  1:1685122/1‑140 (MQ=255)
                                                           tatcGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGGGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGc                                                                            >  2:1583815/1‑140 (MQ=255)
                                                             tcGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCAc                                                                          >  1:234225/1‑140 (MQ=255)
                                                             tcGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCAc                                                                          >  1:182460/1‑140 (MQ=255)
                                                              cgcgGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGt                                                                                     >  1:2962666/1‑128 (MQ=255)
                                                                 ggcgAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTg                                                                                 <  2:3254968/129‑1 (MQ=255)
                                                                 ggcgAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTg                                                                                 >  1:3254968/1‑129 (MQ=255)
                                                                 ggcgAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCt                                                                      >  2:1157225/1‑140 (MQ=255)
                                                                  gcgAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCtt                                                                     <  1:1157225/140‑1 (MQ=255)
                                                                     aaTGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTgcg                                                                  >  1:3213292/1‑140 (MQ=255)
                                                                             gagTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGc                                                          <  2:2314044/140‑1 (MQ=255)
                                                                             gagTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGGGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGc                                                          >  2:2374076/1‑140 (MQ=255)
                                                                               gtgtgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTg                                                        >  2:2102270/1‑140 (MQ=255)
                                                                                tgtgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgc                                                       >  1:2069606/1‑140 (MQ=255)
                                                                                tgtgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgc                                                       <  2:3179564/140‑1 (MQ=255)
                                                                                tgtgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgc                                                       >  1:2162466/1‑140 (MQ=255)
                                                                                tgtgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgc                                                       >  1:685015/1‑140 (MQ=255)
                                                                                 gtgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcg                                                      <  2:572776/140‑1 (MQ=255)
                                                                                  tgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcgc                                                     >  2:873475/1‑140 (MQ=255)
                                                                                  tgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcgc                                                     >  2:90235/1‑140 (MQ=255)
                                                                                  tgtCGGCGGTCAATTTCCCTTAAGTAACGCTAAGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcgc                                                     >  1:3277689/1‑140 (MQ=255)
                                                                                   gtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcgcg                                                    >  1:2091217/1‑140 (MQ=255)
                                                                                     cggcggTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGcgcgcg                                                  >  1:864656/1‑140 (MQ=255)
                                                                                      ggcggTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGa                                                 <  2:1430890/140‑1 (MQ=255)
                                                                                       gcggTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAg                                                <  2:2456184/140‑1 (MQ=255)
                                                                                        cggTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAg                                                <  1:1907146/139‑1 (MQ=255)
                                                                                             aaTTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGtt                                          <  2:1128674/140‑1 (MQ=255)
                                                                                                    cTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGt                                   <  2:2503910/140‑1 (MQ=255)
                                                                                                      tAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGttt                                 <  1:272782/140‑1 (MQ=255)
                                                                                                             cGCTATGTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACt                          >  2:2631033/1‑140 (MQ=255)
                                                                                                                   gTTAGGGTGTTGTGTTCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAAcg                    <  2:791511/140‑1 (MQ=255)
                                                                                                                          tgttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGaa             >  1:455190/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  1:1082274/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  1:1696765/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  2:839586/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  1:2440853/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  2:349965/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  2:3207114/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  2:3023965/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTACAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  1:567953/1‑140 (MQ=255)
                                                                                                                            ttgtgttCTGGATGTCTGGGGCATGACATGGAAAACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAAt           >  2:75899/1‑140 (MQ=255)
                                                                                                                              gtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGa                       >  1:2254614/1‑126 (MQ=255)
                                                                                                                              gtgttCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATcc         >  1:3306212/1‑140 (MQ=255)
                                                                                                                                  tCTGGATGTCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCgg     <  1:898294/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CCGTTGTGCCGCTGTTAAGTGCGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAG  >  NC_000913/2892506‑2892778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A