Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F28 I1 R1
|
126 |
206.4 |
6980590 |
99.2% |
6924745 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,682,126 |
A→G |
intergenic (‑186/+35) |
yhjJ ← / ← dctA |
peptidase M16 family protein/C4 dicarboxylate/orotate:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,682,126 | 0 | A | G | 99.5%
| 736.2
/ ‑4.9
| 204 | intergenic (‑186/+35) | yhjJ/dctA | peptidase M16 family protein/C4 dicarboxylate/orotate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (98/104); total (99/105) |
| Fisher's exact test for biased strand distribution p-value = 4.88e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.00e-01 |
Only 100 of 206 total aligned reads displayed.
GTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAAT > NC_000913/3681990‑3682262
|
gTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTc > 1:27475/1‑140 (MQ=255)
gTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTc < 2:1189382/140‑1 (MQ=255)
gTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCgggg > 1:1487521/1‑140 (MQ=255)
tCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCg > 2:2260720/1‑136 (MQ=255)
tCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGa > 1:164591/1‑140 (MQ=255)
aaaTGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAgg < 1:1147559/140‑1 (MQ=255)
gACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGt < 1:1939408/140‑1 (MQ=255)
gACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGt < 1:3157159/140‑1 (MQ=255)
gTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTc < 1:1358661/125‑1 (MQ=255)
gTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCg > 1:2437743/1‑140 (MQ=255)
gTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCg > 2:2194659/1‑140 (MQ=255)
gTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCg > 2:3109420/1‑140 (MQ=255)
gTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACACACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCg > 2:1451379/1‑140 (MQ=255)
aaaCACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCAt < 2:1654974/140‑1 (MQ=255)
cacTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAgg < 1:2922594/125‑1 (MQ=255)
ttCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAg > 1:1514772/1‑137 (MQ=255)
tCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtgat < 2:156950/140‑1 (MQ=255)
tCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtgat < 2:1349379/140‑1 (MQ=255)
tCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtgat > 1:1340606/1‑140 (MQ=255)
cGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGt < 1:1097806/124‑1 (MQ=255)
cGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGt > 2:1097806/1‑124 (MQ=255)
cGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATaa < 2:3214845/134‑1 (MQ=255)
cGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATaa > 1:3214845/1‑134 (MQ=255)
cGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtgatg < 2:2437743/140‑1 (MQ=255)
gtgtTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtgatg‑‑‑‑‑‑a > 2:933934/1‑140 (MQ=255)
gtTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtga > 1:116158/1‑135 (MQ=255)
tAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGAtt < 2:2384743/140‑1 (MQ=255)
aGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTa < 1:3223127/140‑1 (MQ=255)
cAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtgatg > 2:2559198/1‑128 (MQ=255)
cAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGtgatg < 1:2559198/128‑1 (MQ=255)
cAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGAt > 2:2428298/1‑132 (MQ=255)
cAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGa > 2:2908381/1‑140 (MQ=255)
cAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTAAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGa > 1:2162476/1‑140 (MQ=255)
cATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTc > 2:1330527/1‑140 (MQ=255)
aTGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCg > 2:1498515/1‑140 (MQ=255)
aTGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCg < 2:397074/140‑1 (MQ=255)
aaaTGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCg > 2:201425/1‑140 (MQ=255)
cACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGc > 1:2836322/1‑140 (MQ=255)
ggAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCAt > 1:165557/1‑140 (MQ=255)
gaagaaGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATc < 2:1355723/140‑1 (MQ=255)
gaagTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCgg < 2:1209969/140‑1 (MQ=255)
gaagTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCgg < 1:2109912/140‑1 (MQ=255)
agTGAAATAAATCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGgcg < 1:1750632/140‑1 (MQ=255)
agTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGgcg < 2:2299655/140‑1 (MQ=255)
agTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGgcg > 2:490750/1‑140 (MQ=255)
agTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGgcg < 1:3104843/140‑1 (MQ=255)
gAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCAc < 1:399751/140‑1 (MQ=255)
aaTAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGa < 2:164591/140‑1 (MQ=255)
aTAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATc > 2:326599/1‑129 (MQ=255)
tAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGatt < 1:862351/140‑1 (MQ=255)
ccTGAACTCACCCAGGTGGTAAGTTCGGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGa < 1:1390159/140‑1 (MQ=255)
aCTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGgcg < 2:3059830/124‑1 (MQ=255)
aCCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCg > 1:626277/1‑140 (MQ=255)
aCCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCg > 1:3180949/1‑140 (MQ=255)
ggtAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGttt > 2:1367459/1‑140 (MQ=255)
tAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGttttt > 1:792525/1‑140 (MQ=255)
tAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGttttt > 2:2820347/1‑140 (MQ=255)
aGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg > 1:2067485/1‑140 (MQ=255)
aGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg < 1:2347355/140‑1 (MQ=255)
aGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg > 2:3013744/1‑140 (MQ=255)
aGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg > 1:186176/1‑140 (MQ=255)
aGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg > 2:1536894/1‑140 (MQ=255)
cAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTcc < 1:3028301/127‑1 (MQ=255)
cAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGt > 2:835502/1‑140 (MQ=255)
cAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGt > 1:1250343/1‑140 (MQ=255)
cAGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGt > 2:1790432/1‑140 (MQ=255)
aGGCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTc < 1:2194659/140‑1 (MQ=255)
gCACAGGGGTCAATTATGCGCAAACACTCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCa < 2:1446404/140‑1 (MQ=255)
gCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTc > 1:1581035/1‑123 (MQ=255)
gCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg < 2:1882837/133‑1 (MQ=255)
gCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg < 1:1820881/133‑1 (MQ=255)
gCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTc < 1:1447879/138‑1 (MQ=255)
gCACAGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCa < 2:1377738/140‑1 (MQ=255)
cacaGGGGTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAg < 2:626277/140‑1 (MQ=255)
ggggTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCt > 2:3287090/1‑140 (MQ=255)
ggggTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCt < 2:792525/140‑1 (MQ=255)
ggggTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCt > 1:168325/1‑140 (MQ=255)
gggTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCtt > 2:599988/1‑140 (MQ=255)
gTCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTc > 2:2685769/1‑140 (MQ=255)
tCAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCa < 2:1896593/140‑1 (MQ=255)
cAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTtg > 1:48498/1‑123 (MQ=255)
cAATTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCAc > 2:16127/1‑140 (MQ=255)
aaTTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCAcc < 2:27475/140‑1 (MQ=255)
aTTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCAccc < 1:974190/140‑1 (MQ=255)
aTTATGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCAccc < 1:1896012/140‑1 (MQ=255)
tGCGCAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCa < 1:3269926/124‑1 (MQ=255)
gcgcAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTa > 2:2598200/1‑140 (MQ=255)
cgcAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTTTTTCACCCACt < 2:1657026/137‑1 (MQ=255)
cgcAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAg > 1:2417066/1‑140 (MQ=255)
cgcAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAg > 2:2131195/1‑140 (MQ=255)
cgcAAACACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAg > 1:2137327/1‑140 (MQ=255)
aaaCACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCaa > 2:3433139/1‑140 (MQ=255)
aaaCACCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCaa > 2:2162859/1‑140 (MQ=255)
acacCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCAcc > 1:770221/1‑128 (MQ=255)
acacCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCAcc < 2:770221/128‑1 (MQ=255)
acacCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACg > 1:2262723/1‑140 (MQ=255)
acacCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACg > 1:508711/1‑140 (MQ=255)
acacCCGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACg > 1:2899939/1‑140 (MQ=255)
cccGCGCTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACa < 1:3433139/140‑1 (MQ=255)
cGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAAt > 1:2406598/1‑140 (MQ=255)
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GTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATG‑‑‑‑‑‑AGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAAT > NC_000913/3681990‑3682262
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
