Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 145 97.8 3401598 99.2% 3374385 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,811,947 T→C G338G (GGT→GGC)  tcyP → cystine/sulfocysteine:cation symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,811,9470TC100.0% 321.9 / NA 88G338G (GGT→GGC) tcyPcystine/sulfocysteine:cation symporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (48/40);  total (48/40)

TAAGGTATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGTGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCGGTATTGTTACCGTTAGTTCCG  >  NC_000913/1811815‑1812083
                                                                                                                                    |                                                                                                                                        
tAAGGTATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCa                                                                                                                                   >  2:1270085/1‑140 (MQ=255)
tAAGGTATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCa                                                                                                                                   >  2:480882/1‑140 (MQ=255)
tAAGGTATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAACACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCATCCa                                                                                                                                   <  1:202654/140‑1 (MQ=255)
     tATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCa                                                                                                                                   <  1:833880/135‑1 (MQ=255)
     tATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCa                                                                                                                                   >  2:833880/1‑135 (MQ=255)
     tATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGt                                                                                                                              >  2:535457/1‑140 (MQ=255)
       tGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCAt                                                                                                                                  <  2:1616697/134‑1 (MQ=255)
       tGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCAt                                                                                                                                  >  1:1616697/1‑134 (MQ=255)
       tGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCa                                                                                                                            >  1:142720/1‑140 (MQ=255)
          ccTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGaa                                                                                                                         >  1:1556469/1‑140 (MQ=255)
              tgCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGc                                                                                                                     >  2:1129842/1‑140 (MQ=255)
              tgCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGc                                                                                                                     >  2:1277870/1‑140 (MQ=255)
              tgCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGc                                                                                                                     >  1:975189/1‑140 (MQ=255)
              tgCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGc                                                                                                                     >  2:727109/1‑140 (MQ=255)
              tgCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGc                                                                                                                     >  2:565686/1‑140 (MQ=255)
              tgCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGc                                                                                                                     >  1:703930/1‑140 (MQ=255)
                  gaggTTTGCTTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTgcg                                                                                                                 <  1:1557455/137‑1 (MQ=255)
                   aCGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCt                                                                                                                    <  1:936763/136‑1 (MQ=255)
                   aCGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCt                                                                                                                    >  2:936763/1‑136 (MQ=255)
                   aCGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTgcgc                                                                                                                >  1:753740/1‑140 (MQ=255)
                   aCGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTgcgc                                                                                                                >  2:126161/1‑140 (MQ=255)
                   aCGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTgcgc                                                                                                                <  1:535457/140‑1 (MQ=255)
                   aCGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGCCAGAACGGCTgcgc                                                                                                                >  1:1477690/1‑140 (MQ=255)
                   aCGTTTACCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTgcgc                                                                                                                >  1:592096/1‑140 (MQ=255)
                       ttGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGt                                                                                                            <  1:1270085/140‑1 (MQ=255)
                       ttGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGt                                                                                                            <  1:480882/140‑1 (MQ=255)
                       ttGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGt                                                                                                            <  2:1556469/140‑1 (MQ=255)
                       ttGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGt                                                                                                            <  1:1277870/140‑1 (MQ=255)
                        tGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGtt                                                                                                           >  1:202773/1‑140 (MQ=255)
                        tGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGtt                                                                                                           >  2:1699824/1‑140 (MQ=255)
                        tGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGtt                                                                                                           >  1:1479499/1‑140 (MQ=255)
                                  aGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGc                                                                                                 <  1:527096/140‑1 (MQ=255)
                                   gCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTgcgc                                                                                                                <  2:1421039/124‑1 (MQ=255)
                                   gCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTgcgc                                                                                                                >  1:1421039/1‑124 (MQ=255)
                                    ccGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCaa                                                                                               >  1:1285404/1‑140 (MQ=255)
                                      gTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATg                                                                                             <  2:202773/140‑1 (MQ=255)
                                        tCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCt                                                                                           >  2:491832/1‑140 (MQ=255)
                                              gctgcGTCTATCCCACTGAGTGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGt                                                                                     >  1:711183/1‑140 (MQ=255)
                                               ctgcGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTg                                                                                    <  1:565686/140‑1 (MQ=255)
                                                 gcGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGAt                                                                                  >  1:58090/1‑140 (MQ=255)
                                                  cGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATg                                                                                 >  1:821973/1‑140 (MQ=255)
                                                  cGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATg                                                                                 >  1:864778/1‑140 (MQ=255)
                                                    tCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGt                                                                               <  2:1285404/140‑1 (MQ=255)
                                                       aTCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTgc                                                                            >  2:274117/1‑140 (MQ=255)
                                                       aTCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTgc                                                                            >  1:1198758/1‑140 (MQ=255)
                                                         cccACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTgcgc                                                                          >  2:163870/1‑140 (MQ=255)
                                                           cACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCt                                                                        >  2:48986/1‑140 (MQ=255)
                                                            aCTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTa                                                                       >  1:969935/1‑140 (MQ=255)
                                                              tGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACg                                                                     >  1:959730/1‑140 (MQ=255)
                                                              tGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCCGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACg                                                                     >  1:720093/1‑140 (MQ=255)
                                                                aaTGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGt                                                                   <  1:599420/140‑1 (MQ=255)
                                                                aaTGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGt                                                                   <  2:1198758/140‑1 (MQ=255)
                                                                aaTGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGt                                                                   <  1:1699824/140‑1 (MQ=255)
                                                                 aTGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGtt                                                                  <  1:1129842/140‑1 (MQ=255)
                                                                  tgtgGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTg                                                                 >  1:2664/1‑140 (MQ=255)
                                                                  tgtgGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGGGGTGGATGGGCCCACGGGTg                                                                 >  2:17164/1‑140 (MQ=255)
                                                                         gCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTaa                                                          <  2:959730/140‑1 (MQ=255)
                                                                          cacaAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAAc                                                         >  2:252911/1‑140 (MQ=255)
                                                                          cacaAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAAc                                                         <  1:48986/140‑1 (MQ=255)
                                                                          cacaAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGGTGCGGCTACGGGTGGGATTAAc                                                         >  2:1003273/1‑140 (MQ=255)
                                                                            caAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGGTGGCATTAAccc                                                       >  2:1568250/1‑140 (MQ=255)
                                                                              aaCGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGc                                                     <  2:864778/140‑1 (MQ=255)
                                                                              aaCGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGc                                                     <  2:814375/140‑1 (MQ=255)
                                                                              aaCGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGc                                                     >  1:324940/1‑140 (MQ=255)
                                                                               aCGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCt                                                    <  2:142720/140‑1 (MQ=255)
                                                                                   gtcgtcTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAGCCATTGGCCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGAc                                                <  2:1477690/140‑1 (MQ=255)
                                                                                         tGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGGTGCGCCTACGGGTGGCATTAACCCGCTGGGCCCGAtg                                          >  2:1028488/1‑140 (MQ=255)
                                                                                           ggCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGGGATGGGTGCGCCTACTGTTGGGCTTAAACCGCTTGGCCCCGtgtg                                        >  2:1004731/1‑140 (MQ=255)
                                                                                               ttCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGAtt                                    >  1:634827/1‑140 (MQ=255)
                                                                                                tCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTg                                   >  1:138832/1‑140 (MQ=255)
                                                                                                   tGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGa                                <  1:201397/140‑1 (MQ=255)
                                                                                                     aaTCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACg                              <  2:969935/140‑1 (MQ=255)
                                                                                                       tCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCt                            <  2:58090/140‑1 (MQ=255)
                                                                                                       tCCATCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCt                            <  1:491832/140‑1 (MQ=255)
                                                                                                          aTCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGt                         <  1:274117/140‑1 (MQ=255)
                                                                                                          aTCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGt                         >  1:1468147/1‑140 (MQ=255)
                                                                                                          aTCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGt                         <  2:753740/140‑1 (MQ=255)
                                                                                                          aTCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGt                         >  1:1162973/1‑140 (MQ=255)
                                                                                                          aTCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGt                         <  1:1003273/140‑1 (MQ=255)
                                                                                                          aTCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGt                         <  1:923338/140‑1 (MQ=255)
                                                                                                           tCGCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTc                        <  2:2664/140‑1 (MQ=255)
                                                                                                             gCCAGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCgg                      <  2:324940/140‑1 (MQ=255)
                                                                                                                aGTTTCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCGGTAt                   <  2:720093/140‑1 (MQ=255)
                                                                                                                  tttCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGGCGCTGGGCGGTAttt                 >  2:214384/1‑139 (MQ=255)
                                                                                                                    tCGCCGCCTCTTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCGGTATTGtt               <  2:592096/140‑1 (MQ=255)
                                                                                                                         gccTCTTTCGGCGCAACCATTGGTCAGAACGGGTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCGGTATTGTTACCGt          <  1:17164/140‑1 (MQ=255)
                                                                                                                            tctTTCGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCGGTATTGTTACCGTTAg       <  1:163870/140‑1 (MQ=255)
                                                                                                                                 cGGCGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCGGTATTGTTACCGTTAGTTCCg  <  2:138832/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                        
TAAGGTATGGCCTGTGCTGACGTTTGCCTTTACCAGCCGTTCCAGTGCTGCGTCTATCCCACTGAATGTGGAAGCACAAACGCGTCGTCTGGGCGTTCCTGAATCCATCGCCAGTTTCGCCGCCTCTTTCGGTGCAACCATTGGTCAGAACGGCTGCGCCGGTTTGTATCCGGCAATGCTGGCGGTGATGGTTGCGCCTACGGTTGGCATTAACCCGCTGGACCCGATGTGGATTGCGACGCTGGTCGGTATTGTTACCGTTAGTTCCG  >  NC_000913/1811815‑1812083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A