Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 145 97.8 3401598 99.2% 3374385 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,943,238 T→C C193R (TGC→CGC)  znuC → Zn(2(+)) ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,943,2380TC100.0% 431.1 / NA 117C193R (TGC→CGC) znuCZn(2(+)) ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (62/55);  total (62/55)

Only 100 of 117 total aligned reads displayed.

CTCAAGGCGTGGATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACG  >  NC_000913/1943104‑1943370
                                                                                                                                      |                                                                                                                                    
cTCAAGGCGTGGATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTg                                                                                                                                 >  2:37487/1‑140 (MQ=255)
cTCAAGGCGTGGATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTg                                                                                                                                 >  1:1128662/1‑140 (MQ=255)
     ggCGTGGATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATca                                                                                                                            >  2:1083524/1‑140 (MQ=255)
       cGTGGATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATcacc                                                                                                                          >  2:456482/1‑140 (MQ=255)
       cGTGGATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATcacc                                                                                                                          <  2:889490/140‑1 (MQ=255)
          ggATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACcaca                                                                                                                       >  2:725558/1‑140 (MQ=255)
           gATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACAt                                                                                                                      >  2:631670/1‑140 (MQ=255)
             tGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACAttt                                                                                                                    >  1:722677/1‑140 (MQ=255)
               tAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATttgt                                                                                                                  <  2:722677/140‑1 (MQ=255)
                 aaTGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATttgttg                                                                                                                >  1:771107/1‑140 (MQ=255)
                     gCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTcc                                                                                                            >  1:643390/1‑140 (MQ=255)
                       cAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCgg                                                                                                          <  2:1127644/140‑1 (MQ=255)
                       cAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCgg                                                                                                          <  1:846993/140‑1 (MQ=255)
                       cAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCgg                                                                                                          <  1:443600/140‑1 (MQ=255)
                       cAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCgg                                                                                                          <  2:1128662/140‑1 (MQ=255)
                         ggTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGca                                                                                                        >  1:1530654/1‑140 (MQ=255)
                         ggTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGca                                                                                                        <  1:1627771/140‑1 (MQ=255)
                           tGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGcaca                                                                                                      >  1:1378847/1‑140 (MQ=255)
                              cGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCg                                                                                                   <  2:661984/140‑1 (MQ=255)
                                  atatGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAg                                                                                               <  1:1083524/140‑1 (MQ=255)
                                    atGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAgtt                                                                                             >  1:133308/1‑140 (MQ=255)
                                        ccTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGttt                                                                                         >  2:1310264/1‑140 (MQ=255)
                                        ccTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGttt                                                                                         >  1:686334/1‑140 (MQ=255)
                                           tATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTccc                                                                                      >  1:1684963/1‑140 (MQ=255)
                                           tATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTccc                                                                                      >  1:705982/1‑140 (MQ=255)
                                           tATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTccc                                                                                      >  1:765434/1‑140 (MQ=255)
                                           tATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTccc                                                                                      >  1:1274491/1‑140 (MQ=255)
                                           tATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTccc                                                                                      <  2:686334/140‑1 (MQ=255)
                                             ttGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTccc                                                                                      >  1:57982/1‑138 (MQ=255)
                                             ttGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTccc                                                                                      <  2:57982/138‑1 (MQ=255)
                                                  cAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATcc                                                                               >  1:10558/1‑140 (MQ=255)
                                                  cAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATcc                                                                               <  1:530057/140‑1 (MQ=255)
                                                   aaCTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCg                                                                              >  2:1588196/1‑140 (MQ=255)
                                                   aaCTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCg                                                                              <  1:9349/140‑1 (MQ=255)
                                                   aaCTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCg                                                                              <  1:492158/140‑1 (MQ=255)
                                                   aaCTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCg                                                                              >  1:96004/1‑140 (MQ=255)
                                                    aCTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCgg                                                                             >  1:466208/1‑140 (MQ=255)
                                                        cgtcgtGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGtt                                                                         >  1:1082815/1‑140 (MQ=255)
                                                          tcgtGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCg                                                                              >  1:1178561/1‑133 (MQ=255)
                                                          tcgtGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCg                                                                              <  2:1178561/133‑1 (MQ=255)
                                                          tcgtGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTa                                                                       >  1:1037604/1‑140 (MQ=255)
                                                          tcgtGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTa                                                                       >  1:721476/1‑140 (MQ=255)
                                                           cgtGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTAt                                                                      <  2:10558/140‑1 (MQ=255)
                                                            gtGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCAGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTAtt                                                                     >  1:930513/1‑140 (MQ=255)
                                                               aaCTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCa                                                                  <  2:1684963/140‑1 (MQ=255)
                                                                  tGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATg                                                               <  2:1128635/140‑1 (MQ=255)
                                                                  tGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATg                                                               >  1:767208/1‑140 (MQ=255)
                                                                        gtgGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGt                                                         <  1:37487/140‑1 (MQ=255)
                                                                        gtgGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGt                                                         <  2:1385278/140‑1 (MQ=255)
                                                                         tgGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTc                                                        >  1:1125715/1‑140 (MQ=255)
                                                                            cGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAGTCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTCGTCCTc                                                     >  1:1483180/1‑140 (MQ=255)
                                                                             gTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCg                                                    <  2:721476/140‑1 (MQ=255)
                                                                             gTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCg                                                    <  1:456482/140‑1 (MQ=255)
                                                                             gTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCg                                                    <  2:273457/140‑1 (MQ=255)
                                                                              ttttAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCgt                                                   >  1:616248/1‑140 (MQ=255)
                                                                                ttAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCgtgg                                                 <  2:1082815/140‑1 (MQ=255)
                                                                                    tGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCt                                             <  1:1310264/140‑1 (MQ=255)
                                                                                        ttCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGaac                                         >  1:188836/1‑140 (MQ=255)
                                                                                         tctcACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCgtggtg                                               >  2:702072/1‑133 (MQ=255)
                                                                                         tctcACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCgtggtg                                               <  1:702072/133‑1 (MQ=255)
                                                                                         tctcACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGaaca                                        >  1:726523/1‑140 (MQ=255)
                                                                                          ctcACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCACGTGGTGCTGaacaa                                       <  1:1526075/140‑1 (MQ=255)
                                                                                                     cATCTGGTGATGGCAAAAACCGATGACGAGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGtatctt                            >  2:259787/1‑139 (MQ=255)
                                                                                                     cATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGtatcta                            >  2:754357/1‑140 (MQ=255)
                                                                                                     cATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGtatct                             <  1:1027813/139‑1 (MQ=255)
                                                                                                     cATCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGtatct                             >  2:1027813/1‑139 (MQ=255)
                                                                                                      aTCTGGTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGtatctat                           <  1:754318/140‑1 (MQ=255)
                                                                                                          ggTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGACGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGcc                       <  2:1475559/140‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGtatct                             <  1:1156506/133‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGt                                 >  1:1473275/1‑129 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGt                                 <  2:1473275/129‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGcc                       >  2:939697/1‑139 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGcc                       >  1:599726/1‑139 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGcc                       <  1:939697/139‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  2:250208/140‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  1:214674/1‑140 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  2:73422/140‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  1:250208/1‑140 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  1:684748/1‑140 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  2:671713/140‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  2:466208/140‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  2:1321713/1‑140 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  2:438694/1‑140 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  2:133308/140‑1 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  2:1500946/1‑140 (MQ=255)
                                                                                                           gTGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  2:1563797/140‑1 (MQ=255)
                                                                                                           gTGATAGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  2:876569/1‑140 (MQ=255)
                                                                                                            tGATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCcat                     <  2:767208/140‑1 (MQ=255)
                                                                                                             gATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGcc                       >  2:480012/1‑137 (MQ=255)
                                                                                                             gATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGcc                       <  1:480012/137‑1 (MQ=255)
                                                                                                             gATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCcatc                    >  2:1232149/1‑140 (MQ=255)
                                                                                                             gATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  1:213962/1‑138 (MQ=255)
                                                                                                             gATGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  2:213962/138‑1 (MQ=255)
                                                                                                               tGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      >  2:511985/1‑136 (MQ=255)
                                                                                                               tGGCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCca                      <  1:511985/136‑1 (MQ=255)
                                                                                                                 gCAAAAACCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCcatcatca                <  2:616248/140‑1 (MQ=255)
                                                                                                                   aaaaaCCGATGAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATa              >  2:860948/1‑140 (MQ=255)
                                                                                                                            tGAAGTGCAGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTc     <  2:930513/140‑1 (MQ=255)
                                                                                                                             gAAGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCa    <  1:1500946/140‑1 (MQ=255)
                                                                                                                               aGTGCTGCGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACg  <  2:1274491/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                    
CTCAAGGCGTGGATGTAAATGGCCAGGTGGCGTTATATGACCTTATTGACCAACTGCGTCGTGAACTGGATTGTGGCGTTTTAATGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACG  >  NC_000913/1943104‑1943370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A