Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
145 |
97.8 |
3401598 |
99.2% |
3374385 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,303,905 |
(A)7→8 |
coding (1/489 nt) |
eco → |
serine protease inhibitor ecotin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,303,898 | 1 | . | A | 96.7%
| 314.2
/ 1.6
| 90 | intergenic (+128/‑7) | yojO/eco | uncharacterized protein YojO/serine protease inhibitor ecotin |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base A (50/37); total (52/38) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGAATTTAACACTAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATGAAGCGTCA > NC_000913/2303762‑2304032
|
aGAATTTAACACTAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑aaa > 1:1013347/1‑140 (MQ=255)
aGAATTTAACACTAAAAAAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑aaa > 2:126136/1‑140 (MQ=255)
aaCACTAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑aaaaaaaatg > 2:1073479/1‑137 (MQ=255)
aaCACTAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑aaaaaaaatg > 1:1468699/1‑137 (MQ=255)
cacTAAAAAAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑aaaaaaaatgaa < 1:126136/140‑6 (MQ=255)
tAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGAc > 2:1482475/1‑140 (MQ=255)
tAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGAc < 1:905089/140‑1 (MQ=255)
tAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGAc > 1:871929/1‑140 (MQ=255)
agagCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCAtt < 1:929434/140‑1 (MQ=255)
gCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCAAAAAAAAATGAAGACCATTCt < 1:874139/140‑1 (MQ=255)
cAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTAc > 2:98562/1‑140 (MQ=255)
cAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTAc > 1:950995/1‑140 (MQ=255)
ggTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCt > 1:1093640/1‑140 (MQ=255)
ggTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCt > 1:727262/1‑140 (MQ=255)
ggTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCt > 1:1500044/1‑140 (MQ=255)
gTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTg < 2:736622/140‑1 (MQ=255)
aTTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTa > 2:943586/1‑140 (MQ=255)
tCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGt < 1:989402/140‑1 (MQ=255)
cTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGtt < 2:727262/140‑1 (MQ=255)
cTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGtt > 2:199701/1‑140 (MQ=255)
cTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCGTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGttt > 2:1173262/1‑140 (MQ=255)
aaTGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGc > 1:1405760/1‑140 (MQ=255)
cTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCttt > 1:973414/1‑140 (MQ=255)
aGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTa < 1:453699/140‑1 (MQ=255)
gTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTAc < 1:217059/140‑1 (MQ=255)
ttCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACt > 2:843308/1‑140 (MQ=255)
cATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATCGTTTGCCGCTTTCGCTACCACTTc < 1:98562/140‑1 (MQ=255)
aaTTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGggc > 2:206322/1‑140 (MQ=255)
taataaATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGggcggc < 2:157221/140‑1 (MQ=255)
aaTCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGaaa < 1:843308/140‑1 (MQ=255)
tgaATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCa < 2:1228132/140‑1 (MQ=255)
aaTATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGc < 2:1092527/140‑1 (MQ=255)
tatGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGTAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCa > 2:114622/1‑140 (MQ=255)
tGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACt > 1:646617/1‑140 (MQ=255)
tGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACt > 2:502000/1‑140 (MQ=255)
tAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGaa > 2:1700358/1‑123 (MQ=255)
tAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGaa < 1:1700358/123‑1 (MQ=255)
tAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCg < 2:904190/127‑1 (MQ=255)
tAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCg > 1:904190/1‑127 (MQ=255)
tAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGa > 2:373800/1‑140 (MQ=255)
aCCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGaaa > 1:344971/1‑140 (MQ=255)
ccTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGaaaa > 2:43136/1‑140 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGTAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCa > 2:1193749/1‑130 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGTAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCa < 1:1193749/130‑1 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCa > 2:911042/1‑130 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCa < 1:911042/130‑1 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGaaaaaa > 2:421771/1‑140 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGaaaaaa > 1:1331861/1‑140 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGaaaaaa > 2:535305/1‑140 (MQ=255)
ttCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGTTTTCGCTACCGCTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAAt < 1:1173262/140‑1 (MQ=255)
tCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAAt > 2:1112667/1‑140 (MQ=255)
tCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAAt > 2:1176075/1‑140 (MQ=255)
tCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAAt > 1:1577274/1‑140 (MQ=255)
cAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGc > 1:160026/1‑126 (MQ=255)
cAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGc < 2:160026/126‑1 (MQ=255)
cAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATc > 1:1329300/1‑140 (MQ=255)
cAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATc > 1:1450626/1‑140 (MQ=255)
cAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATc > 1:1416951/1‑140 (MQ=255)
aGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcg > 1:218512/1‑140 (MQ=255)
aGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcg > 1:1337003/1‑140 (MQ=255)
gCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcgc > 1:680189/1‑140 (MQ=255)
cGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcgcg < 1:199701/140‑1 (MQ=255)
cGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcgcg < 1:256186/140‑1 (MQ=255)
aCATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGcc < 2:1329300/140‑1 (MQ=255)
catcatCGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCt < 2:1577274/140‑1 (MQ=255)
atcatcGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcgc < 1:1399387/135‑1 (MQ=255)
atcatcGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcgc > 2:1399387/1‑135 (MQ=255)
tcatcGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCt < 1:1010672/138‑1 (MQ=255)
tcatcGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCt > 2:1010672/1‑138 (MQ=255)
catcGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTAt > 2:191837/1‑140 (MQ=255)
cGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTATCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCca < 2:1479317/140‑1 (MQ=255)
cGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCca < 2:963133/140‑1 (MQ=255)
cGGTGAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCca < 1:1624458/140‑1 (MQ=255)
gAAAACCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAg < 2:973414/140‑1 (MQ=255)
gAAAACCTATAAATGAAGAAGGAAAGC‑‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGc > 1:805435/1‑140 (MQ=255)
aaaaCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCcac > 2:1139444/1‑136 (MQ=255)
aaaaCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCcac < 1:1139444/136‑1 (MQ=255)
aaCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCt > 2:819088/1‑127 (MQ=255)
aaCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCt < 1:819088/127‑1 (MQ=255)
aaCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTg > 2:734461/1‑140 (MQ=255)
aCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcgc > 1:377166/1‑122 (MQ=255)
aCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATcgc < 2:377166/122‑1 (MQ=255)
aCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGa > 1:1409255/1‑140 (MQ=255)
aCCTATAAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGa < 1:43136/140‑1 (MQ=255)
taAATGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAg > 1:430141/1‑140 (MQ=255)
aTGAAG‑AGGCAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTCCCACTCCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGAt < 1:1077639/140‑1 (MQ=255)
tGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGAt > 2:1539051/1‑140 (MQ=255)
tGAAGAAGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGAt < 1:983289/140‑1 (MQ=255)
gaagaaGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATg < 1:373800/140‑1 (MQ=255)
gaagaaGGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATg < 1:1112667/140‑1 (MQ=255)
aagaagGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATGa < 2:1013347/140‑1 (MQ=255)
agaagGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCTGCCTGGGCGGCAGAAAGCGTCCAACCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATGaa > 2:884010/1‑140 (MQ=255)
agaagGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAg > 1:553166/1‑124 (MQ=255)
agaagGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAg < 2:553166/124‑1 (MQ=255)
agaagGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATGaa > 1:1217060/1‑140 (MQ=255)
agaagGAAAGCA‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATGaa > 1:1144830/1‑140 (MQ=255)
aaaaGA‑‑AAAAAAATGAAGTCCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATGAAGCGTCa < 2:503253/139‑1 (MQ=255)
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AGAATTTAACACTAAAAGAGCAGGTAAAATTGTCTGAATGTTCTTTAAGTTATTCATAAAGCAAATTAATAAATCTGATGAATATGTTAACCTTCAGCGACATCATCGGTGAAAACCTATAAATGAAGAAGGAAAGC‑‑AAAAAAATGAAGACCATTCTACCTGCAGTATTGTTTGCCGCTTTCGCTACCACTTCCGCCTGGGCGGCAGAAAGCGTCCAGCCACTGGAAAAAATCGCGCCTTATCCACAAGCTGAAAAAGGGATGAAGCGTCA > NC_000913/2303762‑2304032
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
