Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 164 66.7 2276140 99.1% 2255654 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,820,296 T→C S307G (AGT→GGT)  chbC ← N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,820,2960TC100.0% 243.4 / NA 65S307G (AGT→GGT) chbCN,N'‑diacetylchitobiose‑specific PTS enzyme IIC component
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (29/36);  total (29/36)

ATTGGCAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACTGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCACGGCGTCATAATG  >  NC_000913/1820163‑1820432
                                                                                                                                     |                                                                                                                                        
aTTGGCAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGccccc                                                                                                                                    <  2:759839/140‑1 (MQ=255)
 ttGGCAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCa                                                                                                                                   >  1:215039/1‑140 (MQ=255)
  tGGCAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCGCCACCGCCCCCaa                                                                                                                                  <  2:858922/140‑1 (MQ=255)
   ggCAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAg                                                                                                                                 <  1:1061330/140‑1 (MQ=255)
   ggCAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAg                                                                                                                                 <  2:411513/140‑1 (MQ=255)
     cAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCGGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGa                                                                                                                               <  2:467887/140‑1 (MQ=255)
      aGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGaa                                                                                                                              >  2:972831/1‑140 (MQ=255)
        aCCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGaaaa                                                                                                                            <  2:234256/140‑1 (MQ=255)
        aCCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGaaaa                                                                                                                            >  1:422326/1‑140 (MQ=255)
             aCAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAg                                                                                                                       <  1:591295/140‑1 (MQ=255)
                      gTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGTAAAATaa                                                                                                                         <  1:71404/129‑1 (MQ=255)
                      gTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGTAAAATaa                                                                                                                         >  2:71404/1‑129 (MQ=255)
                             aaTCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCt                                                                                                       <  1:158815/140‑1 (MQ=255)
                             aaTCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCt                                                                                                       <  2:924155/140‑1 (MQ=255)
                                  ggAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGcc                                                                                                  <  2:676170/140‑1 (MQ=255)
                                   gAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGACCAGGCCTAAAGTCGCACCCCCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGccc                                                                                                 <  2:1012873/140‑1 (MQ=255)
                                        tGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCt                                                                                                       <  2:323202/129‑1 (MQ=255)
                                        tGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCt                                                                                                       >  1:323202/1‑129 (MQ=255)
                                        tGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGccc                                                                                                 <  1:171123/135‑1 (MQ=255)
                                        tGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGccc                                                                                                 >  2:171123/1‑135 (MQ=255)
                                        tGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGcc                                                                                                  >  2:550842/1‑134 (MQ=255)
                                        tGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGcc                                                                                                  <  1:550842/134‑1 (MQ=255)
                                        tGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGata                                                                                            >  1:853518/1‑140 (MQ=255)
                                           cGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATgg                                                                                         <  1:1003832/140‑1 (MQ=255)
                                           cGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATgg                                                                                         >  2:716921/1‑140 (MQ=255)
                                           cGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAATCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATgg                                                                                         >  2:916192/1‑140 (MQ=255)
                                              aCGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAg                                                                                      <  2:160868/140‑1 (MQ=255)
                                                  cAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGa                                                                                        <  1:723449/134‑1 (MQ=255)
                                                  cAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGa                                                                                        >  2:723449/1‑134 (MQ=255)
                                                          gTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCt                                                                          >  2:1048721/1‑140 (MQ=255)
                                                          gTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAAGTCTTACCGGCt                                                                          >  2:544075/1‑140 (MQ=255)
                                                           ttttGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTg                                                                         >  2:216543/1‑140 (MQ=255)
                                                               gCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAg                                                                     <  1:424447/140‑1 (MQ=255)
                                                                 cACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAgcg                                                                   <  2:1135170/140‑1 (MQ=255)
                                                                       aCGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCtt                                                             >  2:907311/1‑140 (MQ=255)
                                                                          aTAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGa                                                          <  1:1048721/140‑1 (MQ=255)
                                                                          aTAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGa                                                          <  1:114327/140‑1 (MQ=255)
                                                                            aaTCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACg                                                        <  2:853518/140‑1 (MQ=255)
                                                                             aTCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACgg                                                       <  2:215039/140‑1 (MQ=255)
                                                                             aTCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCACAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACgg                                                       >  2:1015072/1‑140 (MQ=255)
                                                                               cAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGaa                                                     <  1:216543/140‑1 (MQ=255)
                                                                                 gCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAACTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAAcc                                                   <  2:1047468/140‑1 (MQ=255)
                                                                                  cACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGa                                                      >  2:470713/1‑136 (MQ=255)
                                                                                  cACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGa                                                      <  1:470713/136‑1 (MQ=255)
                                                                                     ggCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCatat                                               >  2:773674/1‑140 (MQ=255)
                                                                                       cGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTg                                             >  1:1135804/1‑140 (MQ=255)
                                                                                          gagGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGaa                                                     <  1:620986/129‑1 (MQ=255)
                                                                                          gagGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGaa                                                     >  2:620986/1‑129 (MQ=255)
                                                                                            ggCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGAt                                        <  1:1015072/140‑1 (MQ=255)
                                                                                                  aaaGATAGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTcg                                  <  2:1135804/140‑1 (MQ=255)
                                                                                                        aGCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAAGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAAGTCGCGatat                            >  1:582257/1‑140 (MQ=255)
                                                                                                         gCCAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATAtt                           <  1:773674/140‑1 (MQ=255)
                                                                                                          ccAGGATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATAttt                          >  2:329075/1‑140 (MQ=255)
                                                                                                              gATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTcg                                  <  1:880672/128‑1 (MQ=255)
                                                                                                              gATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTcg                                  >  2:880672/1‑128 (MQ=255)
                                                                                                              gATCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCa                      >  1:312921/1‑140 (MQ=255)
                                                                                                               aTCAGGCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAg                     >  1:480368/1‑140 (MQ=255)
                                                                                                                   ggCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGcc                 >  2:71190/1‑140 (MQ=255)
                                                                                                                   ggCCTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGcc                 >  1:337094/1‑140 (MQ=255)
                                                                                                                    gCCTAAAGTCGCACCCCCGCCCCAAAGGAAAATAAAGGAGCCCAGCATCGGCTTGGCCCAGATATGGAAGGTC‑TACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCa               <  1:234705/140‑1 (MQ=255)
                                                                                                                     ccTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCa               <  2:582257/140‑1 (MQ=255)
                                                                                                                     ccTAAAGTCGCACCACCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCa               <  2:312921/140‑1 (MQ=255)
                                                                                                                               caccacCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCACgg            <  1:362713/133‑1 (MQ=255)
                                                                                                                               caccacCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCACgg            >  2:362713/1‑133 (MQ=255)
                                                                                                                               caccacCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCACGGCg          <  2:422322/135‑1 (MQ=255)
                                                                                                                               caccacCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCACGGCg          >  1:422322/1‑135 (MQ=255)
                                                                                                                                  cacCGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCACGGCGTCATAATg  <  2:480368/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
ATTGGCAGACCAAACAGAATCGGTTCGTTAATCTGGAAGATGCCGGACGGCAGCGCCAGTTTTGCCACCTGACGATAATCAGCACGGCGAGAGGCGATAAAGATAGCCAGGATCAGGCCTAAAGTCGCACCACTGCCCCCAAGGAAAATAAAGGAGTCCAGCATCGGCTTGGCCCAGATATGGAAGGTCTTACCGGCTGCCAGCGCCGCTTCGACGGAACCATATTGCTGATAGGTCGCGATATTTTCCAGTGCCCACGGCGTCATAATG  >  NC_000913/1820163‑1820432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A