Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 164 66.7 2276140 99.1% 2255654 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,889,776 T→C intergenic (‑30/+175) fadD ← / ← yeaY fatty acyl‑CoA synthetase/Slp family lipoprotein YeaY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,889,7760TC100.0% 247.2 / NA 67intergenic (‑30/+175)fadD/yeaYfatty acyl‑CoA synthetase/Slp family lipoprotein YeaY
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (27/40);  total (27/40)

GTAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGTCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCTTTACCGTA  >  NC_000913/1889639‑1889896
                                                                                                                                         |                                                                                                                        
gTAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCa                                                                                                                        >  2:1125494/1‑140 (MQ=255)
   gcgcgcGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCCCTAAAATGCGTGTTCGTCGCCATCg                                                                                                                     <  1:1097827/140‑1 (MQ=255)
    cgcgcgACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGc                                                                                                                    <  1:363143/140‑1 (MQ=255)
     gcgcgACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCa                                                                                                                   <  2:249305/140‑1 (MQ=255)
      cgcgACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCaa                                                                                                                  <  1:804472/140‑1 (MQ=255)
         gaccgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAccc                                                                                                               >  1:1067133/1‑140 (MQ=255)
         gaccgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAccc                                                                                                               >  1:429188/1‑140 (MQ=255)
         gaccgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAccc                                                                                                               >  2:161658/1‑140 (MQ=255)
         gaccgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAccc                                                                                                               >  1:272792/1‑140 (MQ=255)
          accgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAcccc                                                                                                              <  1:1055733/140‑1 (MQ=255)
          accgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAcccc                                                                                                              <  2:429188/140‑1 (MQ=255)
          accgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAcccc                                                                                                              <  1:298764/140‑1 (MQ=255)
          accgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAcccc                                                                                                              <  1:845771/140‑1 (MQ=255)
          accgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAcccc                                                                                                              <  2:854722/140‑1 (MQ=255)
          accgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAcccc                                                                                                              <  2:1067133/140‑1 (MQ=255)
          accgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAAcccc                                                                                                              <  1:1125494/140‑1 (MQ=255)
           ccgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCa                                                                                                             <  1:431502/140‑1 (MQ=255)
            cgacTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCaa                                                                                                            <  2:671199/140‑1 (MQ=255)
               cTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATg                                                                                                         <  2:660766/140‑1 (MQ=255)
                tGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGa                                                                                                        <  1:832793/140‑1 (MQ=255)
                     aaaCATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATAc                                                                                                   >  2:815701/1‑140 (MQ=255)
                          tatCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCACCCCCAAATGATATACATGcc                                                                                              <  2:225557/140‑1 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCACCCCCAAATGATATACATGCCGt                                                                                            <  1:161658/140‑1 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCTCAAATGATATACATGCCGt                                                                                            >  2:800327/1‑140 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            >  2:300289/1‑140 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            <  1:815701/140‑1 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            >  2:747907/1‑140 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            >  1:655327/1‑140 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            <  2:138110/140‑1 (MQ=255)
                            tCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            >  1:138110/1‑140 (MQ=255)
                             cTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGtt                                                                                           >  1:792712/1‑140 (MQ=255)
                                 cAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCACCCCCAAATGATATACATGCCGTTAACa                                                                                       <  2:730951/140‑1 (MQ=255)
                                 cAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACa                                                                                       >  2:342052/1‑140 (MQ=255)
                                  agagATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACat                                                                                      <  1:8371/140‑1 (MQ=255)
                                  agagATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACat                                                                                      <  1:498730/140‑1 (MQ=255)
                                  agagATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCAATCGCAACCCAAAATGATATCCATGCCGTTAACat                                                                                      <  2:1111686/140‑1 (MQ=255)
                                    agaTTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            <  1:653058/132‑1 (MQ=255)
                                    agaTTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGt                                                                                            >  2:653058/1‑132 (MQ=255)
                                    agaTTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACataa                                                                                    >  2:842167/1‑140 (MQ=255)
                                     gaTTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACataat                                                                                   >  1:547576/1‑140 (MQ=255)
                                      aTTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACa                                                                                       >  2:861140/1‑135 (MQ=255)
                                      aTTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACa                                                                                       <  1:861140/135‑1 (MQ=255)
                                          aTAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCTCAAATGATATACATGCCGTTAACATAATATTaa                                                                              <  1:800327/140‑1 (MQ=255)
                                          aTAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTaa                                                                              <  1:747907/140‑1 (MQ=255)
                                          aTAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTaa                                                                              <  2:547576/140‑1 (MQ=255)
                                          aTAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTaa                                                                              <  1:300289/140‑1 (MQ=255)
                                          aTAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCAAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCACCCCCAAATGATATACATGCCGTTAACATAATATTaa                                                                              <  2:564264/140‑1 (MQ=255)
                                              cGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACtca                                                                          >  1:431528/1‑140 (MQ=255)
                                                gTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACtcatc                                                                        >  2:189435/1‑140 (MQ=255)
                                                gTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACtcatc                                                                        >  1:197475/1‑140 (MQ=255)
                                                   aGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATa                                                                     <  1:189250/140‑1 (MQ=255)
                                                    gggTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATAc                                                                    <  1:189435/140‑1 (MQ=255)
                                                    gggTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATAc                                                                    <  2:792712/140‑1 (MQ=255)
                                                        tGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGc                                                                <  1:718456/140‑1 (MQ=255)
                                                        tGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCAAAACCTTCTTCAATTCTTCCCCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGc                                                                <  2:114283/140‑1 (MQ=255)
                                                          aTCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCtt                                                              >  1:755480/1‑140 (MQ=255)
                                                               cGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATaa                                                         <  1:1049825/140‑1 (MQ=255)
                                                                     aaCGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTAccc                                                   <  2:755480/140‑1 (MQ=255)
                                                                                    aCGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCg                                    <  1:842167/140‑1 (MQ=255)
                                                                                          aaGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAgcgc                              >  1:57485/1‑140 (MQ=255)
                                                                                              cAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATATATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCa                          <  1:51177/140‑1 (MQ=255)
                                                                                                aaCCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACt                        >  1:857466/1‑140 (MQ=255)
                                                                                                 aCCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACta                       >  2:501699/1‑140 (MQ=255)
                                                                                                  ccTTCTTCAATTTTTCACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACtat                      <  2:655327/140‑1 (MQ=255)
                                                                                                               ttcACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCtt         >  1:497062/1‑140 (MQ=255)
                                                                                                               ttcACCTCTAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCtt         >  1:261465/1‑140 (MQ=255)
                                                                                                                     tctAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCTTTACCGt   <  2:431528/140‑1 (MQ=255)
                                                                                                                      ctAAAATGCGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCTTTACCGTa  <  2:57485/140‑1 (MQ=255)
                                                                                                                              cGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCTTTACCGt   <  2:644805/131‑1 (MQ=255)
                                                                                                                              cGTGTTCGTCGCCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCTTTACCGt   >  1:644805/1‑131 (MQ=255)
                                                                                                                                         |                                                                                                                        
GTAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGGAACGTCCGCGGGATAACGGTTAAGCCAAACCTTCTTCAATTCTTCACCTCTAAAATGCGTGTTCGTCGTCATCGCAACCCCAAATGATATACATGCCGTTAACATAATATTAACTCATCATACCAGCTTGATAATTACCCAACGAAAAGGTTGCGAAGCGCGTCACTATTTATTTTTATCTTTACCGTA  >  NC_000913/1889639‑1889896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A