Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	164	66.7	2276140	99.1%	2255654	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,773,416	(T)_8→7	coding (99/1704 nt)	yfjW →	CP4‑57 prophage; uncharacterized protein YfjW

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,773,409	0	T	.	100.0%	357.2 / NA	83	coding (92/1704 nt)	yfjW	CP4‑57 prophage; uncharacterized protein YfjW
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (39/44); total (39/44)

TATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTATTTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTACCT  >  NC_000913/2773274‑2773544

tATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttt                                                                                                                                     >  2:686925/1‑140 (MQ=255)

  tGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   <  2:877558/140‑1 (MQ=255)

  tGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   <  2:1094131/140‑1 (MQ=255)

  tGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   >  1:1094131/1‑140 (MQ=255)

     ttAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAtttttttctt                                                                                                                                <  1:1123923/140‑4 (MQ=255)

       aaaaaTCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTtcttct                                                                                                                             <  1:632166/140‑1 (MQ=255)

            tCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTa                                                                                                                        <  2:1108417/140‑1 (MQ=255)

             cAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   >  1:1004463/1‑129 (MQ=255)

             cAACCTTAAAGGCTTTATACACGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   <  2:1004463/129‑1 (MQ=255)

               aCCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTg                                                                                                                     >  2:1128540/1‑140 (MQ=255)

               aCCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTg                                                                                                                     >  1:811612/1‑140 (MQ=255)

                          tttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCttt                                                                                                          >  2:278883/1‑140 (MQ=255)

                          tttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCttt                                                                                                          >  2:182979/1‑140 (MQ=255)

                           ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTctct                                                                                                            <  1:111402/137‑1 (MQ=255)

                           ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTctct                                                                                                            >  2:111402/1‑137 (MQ=255)

                           ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTc                                                                                                         >  1:14961/1‑140 (MQ=255)

                           ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTc                                                                                                         >  2:647750/1‑140 (MQ=255)

                             ataCATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCaa                                                                                                       <  1:10022/140‑1 (MQ=255)

                                 aTGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATAtt                                                                                                   <  1:648468/140‑1 (MQ=255)

                                      tttGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTAcc                                                                                              >  2:165235/1‑140 (MQ=255)

                                      tttGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTAcc                                                                                              >  1:215868/1‑140 (MQ=255)

                                       ttGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCg                                                                                             <  1:9925/140‑1 (MQ=255)

                                        tGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGc                                                                                            >  2:473688/1‑140 (MQ=255)

                                        tGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGc                                                                                            >  2:773666/1‑140 (MQ=255)

                                          cTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTg                                                                                          >  1:901407/1‑140 (MQ=255)

                                             tGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCt                                                                                       <  1:342488/140‑1 (MQ=255)

                                               gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  2:654320/1‑140 (MQ=255)

                                               gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:558321/1‑140 (MQ=255)

                                               gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:1001288/1‑140 (MQ=255)

                                               gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:1119760/1‑140 (MQ=255)

                                               gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:739585/1‑140 (MQ=255)

                                               gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  2:268208/1‑140 (MQ=255)

                                               gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:691610/1‑140 (MQ=255)

                                                  tttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTcaca                                                                                  <  1:248483/140‑1 (MQ=255)

                                                  tttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTcaca                                                                                  <  2:365419/140‑1 (MQ=255)

                                                  tttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTcaca                                                                                  >  2:63961/1‑140 (MQ=255)

                                                   ttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACaa                                                                                 <  1:890451/140‑1 (MQ=255)

                                                       aTCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAgg                                                                             <  2:315410/140‑1 (MQ=255)

                                                         cAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTa                                                                           <  2:1001288/140‑1 (MQ=255)

                                                         cAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTa                                                                           <  1:165235/140‑1 (MQ=255)

                                                         cAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTa                                                                           <  1:278883/140‑1 (MQ=255)

                                                          aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:773666/140‑1 (MQ=255)

                                                          aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:268208/140‑1 (MQ=255)

                                                          aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:686925/140‑1 (MQ=255)

                                                          aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  2:863003/140‑1 (MQ=255)

                                                          aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:647750/140‑1 (MQ=255)

                                                          aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  2:901407/140‑1 (MQ=255)

                                                          aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  2:811612/140‑1 (MQ=255)

                                                           gAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAAt                                                                         >  1:641905/1‑140 (MQ=255)

                                                            aaaGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAAtt                                                                        >  1:773084/1‑140 (MQ=255)

                                                                agaAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTa                                                                    >  2:3677/1‑140 (MQ=255)

                                                                agaAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTa                                                                    >  2:606211/1‑140 (MQ=255)

                                                                 gaAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTAt                                                                   <  2:870193/140‑1 (MQ=255)

                                                                          agaaagaTATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCa                                                          >  1:190951/1‑140 (MQ=255)

                                                                          agaaagaTATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCa                                                          >  1:308340/1‑140 (MQ=255)

                                                                            aaagaTATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAAt                                                        >  1:292980/1‑140 (MQ=255)

                                                                                atatTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGaaa                                                    <  2:691610/140‑1 (MQ=255)

                                                                                  atTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACt                                                  >  2:964417/1‑140 (MQ=255)

                                                                                     tAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGa                                               <  2:739585/140‑1 (MQ=255)

                                                                                      aGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGAt                                              >  1:635404/1‑140 (MQ=255)

                                                                                       gCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGAtt                                             >  1:761097/1‑140 (MQ=255)

                                                                                          aaaaaaTTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACa                                          >  1:341504/1‑140 (MQ=255)

                                                                                                    cTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAatt                                <  2:201887/140‑1 (MQ=255)

                                                                                                              ttGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCa                      >  1:848718/1‑140 (MQ=255)

                                                                                                                 gCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTg                   >  1:316027/1‑140 (MQ=255)

                                                                                                                   aTTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGa                 <  2:641905/140‑1 (MQ=255)

                                                                                                                     ttttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGaaa               <  1:209206/140‑1 (MQ=255)

                                                                                                                      tttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAAc              <  2:316027/140‑1 (MQ=255)

                                                                                                                      tttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAAc              <  2:341504/140‑1 (MQ=255)

                                                                                                                       ttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAAcc             >  1:14460/1‑140 (MQ=255)

                                                                                                                        tCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCg            <  1:3677/140‑1 (MQ=255)

                                                                                                                        tCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCg            >  2:200651/1‑140 (MQ=255)

                                                                                                                        tCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCA‑‑ATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  2:14961/140‑1 (MQ=255)

                                                                                                                          tataTTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  1:182979/140‑1 (MQ=255)

                                                                                                                          tataTTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  2:215868/140‑1 (MQ=255)

                                                                                                                          tataTTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  2:848718/140‑1 (MQ=255)

                                                                                                                             atTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  1:964417/140‑1 (MQ=255)

                                                                                                                             atTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  2:761097/140‑1 (MQ=255)

                                                                                                                              tttCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGt      <  1:200651/140‑1 (MQ=255)

                                                                                                                                tCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTAc    <  1:654320/140‑1 (MQ=255)

                                                                                                                                tCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTAc    <  1:606211/140‑1 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACt                    >  1:131060/1‑123 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACt                    <  2:131060/123‑1 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGa                 >  1:939634/1‑126 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGa                 <  2:939634/126‑1 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       >  1:301015/1‑136 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  2:301015/136‑1 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCATTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  2:1007725/136‑1 (MQ=255)

                                                                                                                                 ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCATTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       >  1:1007725/1‑136 (MQ=255)

                                                                                                                                  ctctA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTACCt  <  2:1080919/140‑1 (MQ=255)

TATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTATTTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTACCT  >  NC_000913/2773274‑2773544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A