Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 126 51.4 1736588 99.0% 1719222 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,819,417 G→A A865A (GCC→GCT)  alaS ← alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,819,4170GA100.0% 238.1 / NA 67A865A (GCC→GCT) alaSalanine‑‑tRNA ligase/DNA‑binding transcriptional repressor
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (29/38);  total (29/38)

AAGTTTAGCCGATATACACAACTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTGGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGACGTCC  >  NC_000913/2819280‑2819552
                                                                                                                                         |                                                                                                                                       
aaGTTTAGCCGATATACACAACTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGc                                                                                                                                       >  2:327281/1‑140 (MQ=255)
       gCCGATATACACAACTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCt                                                                                                                                >  1:512928/1‑140 (MQ=255)
        ccGATATACACAACTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTg                                                                                                                               >  2:297821/1‑140 (MQ=255)
        ccGATATACACAACTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTg                                                                                                                               <  2:831457/140‑1 (MQ=255)
                     cTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgc                                                                                                                  <  1:588352/140‑1 (MQ=255)
                     cTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgc                                                                                                                  >  2:191976/1‑140 (MQ=255)
                     cTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgc                                                                                                                  >  2:439275/1‑140 (MQ=255)
                     cTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgc                                                                                                                  >  2:33706/1‑140 (MQ=255)
                     cTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgc                                                                                                                  >  2:783148/1‑140 (MQ=255)
                     cTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgc                                                                                                                  >  1:383836/1‑140 (MQ=255)
                      ttCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAgg                                                                                                                           >  2:384280/1‑130 (MQ=255)
                      ttCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAgg                                                                                                                           <  1:384280/130‑1 (MQ=255)
                       tCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgcag                                                                                                                >  1:187769/1‑140 (MQ=255)
                        cAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgcagc                                                                                                               <  2:242037/140‑1 (MQ=255)
                        cAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgcagc                                                                                                               <  1:318071/140‑1 (MQ=255)
                          aCCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCAt                                                                                                             >  1:709220/1‑140 (MQ=255)
                          aCCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCAt                                                                                                             <  2:549008/140‑1 (MQ=255)
                           ccTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATc                                                                                                            <  1:464779/140‑1 (MQ=255)
                            cTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATcc                                                                                                           <  2:846897/140‑1 (MQ=255)
                             tGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCCATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCg                                                                                                          <  2:141925/140‑1 (MQ=255)
                               aCTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgca                                                                                                                 <  1:259635/131‑1 (MQ=255)
                               aCTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCgca                                                                                                                 >  2:259635/1‑131 (MQ=255)
                               aCTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTa                                                                                                        >  2:178134/1‑140 (MQ=255)
                                  ttATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTacca                                                                                                     <  1:297821/140‑1 (MQ=255)
                                   tATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTaccac                                                                                                    <  2:703419/140‑1 (MQ=255)
                                          gTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTg                                                                                             >  1:858826/1‑140 (MQ=255)
                                            cGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTgcg                                                                                           <  1:178134/140‑1 (MQ=255)
                                            cGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTgcg                                                                                           <  2:249446/140‑1 (MQ=255)
                                            cGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTgcg                                                                                           <  1:191976/140‑1 (MQ=255)
                                                   gTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTc                                                                                    <  2:181606/140‑1 (MQ=255)
                                                     tAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAg                                                                                  >  1:91987/1‑140 (MQ=255)
                                                       aTGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGa                                                                                <  1:33706/140‑1 (MQ=255)
                                                            aaTGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTcc                                                                           >  2:383355/1‑140 (MQ=255)
                                                            aaTGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTcc                                                                           >  2:163432/1‑140 (MQ=255)
                                                              tGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTccac                                                                         >  1:28784/1‑140 (MQ=255)
                                                                   tGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCAccc                                                                    >  1:414027/1‑140 (MQ=255)
                                                                   tGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCAccc                                                                    >  1:230477/1‑140 (MQ=255)
                                                                       gCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTgc                                                                <  2:646830/140‑1 (MQ=255)
                                                                           gTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGTATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTgccgcc                                                            <  1:45220/140‑1 (MQ=255)
                                                                           gTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTgccgcc                                                            >  1:614059/1‑140 (MQ=255)
                                                                           gTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTgccgcc                                                            <  2:379587/140‑1 (MQ=255)
                                                                                     ttGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCCCCCTTGCCGCCCACCTGCTGa                                                  <  2:614059/140‑1 (MQ=255)
                                                                                     ttGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGa                                                  <  2:512928/140‑1 (MQ=255)
                                                                                      tGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAg                                                 <  2:612702/140‑1 (MQ=255)
                                                                                        ccTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCg                                               >  2:510507/1‑140 (MQ=255)
                                                                                         cTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGa                                              <  2:383836/140‑1 (MQ=255)
                                                                                           gACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGTCGCCCACCTGCTGAGCGAcc                                            <  2:91987/140‑1 (MQ=255)
                                                                                             cGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCAt                                          >  1:347456/1‑140 (MQ=255)
                                                                                                       attGCAATTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGt                                >  1:365371/1‑140 (MQ=255)
                                                                                                            aaTTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTcccc                           <  2:347456/140‑1 (MQ=255)
                                                                                                             aTTTCGCGCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCt                          >  2:707465/1‑140 (MQ=255)
                                                                                                                 cgcgCTGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCtt                      >  1:630435/1‑140 (MQ=255)
                                                                                                                      tGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTcaca                 <  2:414027/140‑1 (MQ=255)
                                                                                                                      tGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTcaca                 <  2:858826/140‑1 (MQ=255)
                                                                                                                      tGACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTcaca                 <  2:709220/140‑1 (MQ=255)
                                                                                                                       gACCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCacac                <  1:180520/140‑1 (MQ=255)
                                                                                                                        aCCCAGCCTTTCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACg               >  1:866821/1‑140 (MQ=255)
                                                                                                                                tttCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGa       <  1:383355/140‑1 (MQ=255)
                                                                                                                                tttCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGa       <  2:214368/140‑1 (MQ=255)
                                                                                                                                 ttCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGAc      <  1:510507/140‑1 (MQ=255)
                                                                                                                                 ttCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGAc      <  2:365371/140‑1 (MQ=255)
                                                                                                                                  tCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTcaca                 <  2:260145/128‑1 (MQ=255)
                                                                                                                                  tCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTcaca                 >  1:260145/1‑128 (MQ=255)
                                                                                                                                  tCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGAc      <  1:604435/139‑1 (MQ=255)
                                                                                                                                  tCACACTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGAc      >  2:604435/1‑139 (MQ=255)
                                                                                                                                   cacaCTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGACGt    <  2:866821/140‑1 (MQ=255)
                                                                                                                                     cacTAGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGACGTcc  <  2:28784/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
AAGTTTAGCCGATATACACAACTTCAACCTGACTTTATCGTTGTCGATAGCGTTAATGCGAATGCCGTGAAGCGAGTCCACGGCATTGCCTGACGCTTATATTATTGCAATTTCGCGCTGACCCAGCCTTTCACACTGGCTAACGCTGCAGGTAAGGCCGCAGCATCCGTACCACCGGCTTGCGCCATGTCAGGACGTCCACCACCCTTGCCGCCCACCTGCTGAGCGACCATACCAATCAGTTCCCCTGCTTTCACACGATCTGTGACGTCC  >  NC_000913/2819280‑2819552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A