Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
139 |
58.0 |
1973578 |
98.9% |
1951868 |
138.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,696,946 |
G→A |
A36V (GCC→GTC) |
uidR ← |
DNA‑binding transcriptional repressor UidR |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,696,946 | 0 | G | A | 100.0%
| 213.4
/ NA
| 61 | A36V (GCC→GTC) | uidR | DNA‑binding transcriptional repressor UidR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (29/32); total (29/32) |
ATCCCTTCAATCGGTTCCCGGAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGGCTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCATTATAGTTAGCGTGAATAA > NC_000913/1696811‑1697078
|
aTCCCTTCAATCGGTTCCCGGAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGTAAGATTTACAGATGACttt < 2:575768/140‑1 (MQ=255)
aTCCCTTCAATCGGTTCCCGGAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACttt < 1:642615/140‑1 (MQ=255)
ttCAATCGGTTCCCGGAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCg < 1:862577/140‑1 (MQ=255)
ttCCCGGAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACtgt < 1:224769/140‑1 (MQ=255)
gAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCAt > 2:434249/1‑123 (MQ=255)
gAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCAt < 1:434249/123‑1 (MQ=255)
cGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCAtt > 1:873642/1‑140 (MQ=255)
cGGGCAAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCAtt > 1:158131/1‑140 (MQ=255)
aGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGa < 1:536935/140‑1 (MQ=255)
tcCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGAGTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAAtctc < 2:786374/140‑1 (MQ=255)
gTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCTCTGTGAAATCCATTTTCTGAAAAAATCTCTCTgg < 2:873642/140‑1 (MQ=255)
tGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGgcagc < 1:34101/140‑1 (MQ=255)
gTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGgcagca > 2:552944/1‑140 (MQ=255)
gTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGgcagca > 2:34968/1‑140 (MQ=255)
gTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGgcagca > 1:615952/1‑140 (MQ=255)
gTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGgca < 2:591287/137‑1 (MQ=255)
gTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGgca > 1:591287/1‑137 (MQ=255)
tCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATc < 1:552944/140‑1 (MQ=255)
gCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCg > 2:583774/1‑140 (MQ=255)
cTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATc < 1:263780/136‑1 (MQ=255)
cTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATc > 2:263780/1‑136 (MQ=255)
cTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCggg < 1:943212/140‑1 (MQ=255)
tGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGt > 2:490800/1‑140 (MQ=255)
gAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTc > 1:182442/1‑140 (MQ=255)
aaGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCgtgt < 2:655177/140‑1 (MQ=255)
tcttTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTtg > 1:344522/1‑140 (MQ=255)
tttGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTtgtg > 2:590689/1‑140 (MQ=255)
tGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCt < 1:313280/140‑1 (MQ=255)
ggAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCtt < 1:490800/140‑1 (MQ=255)
agaTGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCtt < 2:589026/138‑1 (MQ=255)
agaTGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCtt > 1:589026/1‑138 (MQ=255)
gAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCt > 1:443227/1‑140 (MQ=255)
ggTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTGCGTGTCGGTTGTGCCTCAGTCTGCATg < 2:615952/140‑1 (MQ=255)
ggTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATg < 2:182442/140‑1 (MQ=255)
gTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCa < 2:658985/137‑1 (MQ=255)
gTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCa > 1:658985/1‑137 (MQ=255)
agagCGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATcc < 1:590689/140‑1 (MQ=255)
cGTCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCcatca > 2:370893/1‑140 (MQ=255)
tCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTc > 1:296318/1‑122 (MQ=255)
tCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTc < 2:296318/122‑1 (MQ=255)
tCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATc > 1:352561/1‑133 (MQ=255)
tCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATc < 2:352561/133‑1 (MQ=255)
tCCCGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCAtt > 1:240569/1‑140 (MQ=255)
cccGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTa > 1:762230/1‑140 (MQ=255)
cccGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTa < 1:522301/140‑1 (MQ=255)
cccGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTa < 1:547472/140‑1 (MQ=255)
cccGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTa < 1:583774/140‑1 (MQ=255)
cGGGACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTaaa < 1:271632/140‑1 (MQ=255)
gACTAATGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCa > 2:547702/1‑140 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGTATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTaaa < 1:521717/132‑1 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGTATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTaaa > 2:521717/1‑132 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTaaa < 2:116397/132‑1 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTaaa > 1:116397/1‑132 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTa > 1:915437/1‑130 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTa < 2:915437/130‑1 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAAcc > 1:877461/1‑134 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCATtata > 2:399497/1‑140 (MQ=255)
aTGGCGCAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCATtata > 2:767217/1‑140 (MQ=255)
aTGGCGCAAGACTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCAGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAAcc < 2:877461/134‑1 (MQ=255)
cAAGATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCATTATAGTTAGc > 1:421922/1‑140 (MQ=255)
gATTTACAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCATTATAGTTAGCGTg < 2:240569/140‑1 (MQ=255)
aCAGATGACTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCATTATAGTTAGCGTGAATaa < 1:34968/140‑1 (MQ=255)
|
ATCCCTTCAATCGGTTCCCGGAAACGGGCCAGCGCCCTCTCCTGGTCCTGTAAGATAATCGCCTGAATCAAGGCTTCTTTGGAGATGAAATGGTGATAGAGCGTCCCGGGACTAATGGCGCAAGATTTACAGATGGCTTTCATCGAGGCACTGTGAAATCCATTTTCTGAAAAAATCTCTCTGGCAGCATTGAGGATCCGGGTCCGTGTCGGTTGTGCTTCAGTCTGCATGTTATCCATCATTAAACCATTATAGTTAGCGTGAATAA > NC_000913/1696811‑1697078
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A