Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 139 58.0 1973578 98.9% 1951868 138.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,873,038 T→C A100A (GCA→GCG)  ygbE ← conserved inner membrane protein YgbE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,873,0380TC98.9% 318.7 / ‑4.5 89A100A (GCA→GCG) ygbEconserved inner membrane protein YgbE
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (42/46);  total (43/46)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01

CGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGT  >  NC_000913/2872902‑2873169
                                                                                                                                        |                                                                                                                                   
cgGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGcgcg                                                                                                                                  >  1:281866/1‑140 (MQ=255)
  ggCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGcc                                                                                                                                >  1:247024/1‑140 (MQ=255)
    cAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCaa                                                                                                                              <  1:550576/140‑1 (MQ=255)
        tGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACAt                                                                                                                          <  2:281866/140‑1 (MQ=255)
        tGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACAt                                                                                                                          <  1:308690/140‑1 (MQ=255)
             cacaTTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGc                                                                                                                     <  2:247024/140‑1 (MQ=255)
             cacaTTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGc                                                                                                                     <  2:252907/140‑1 (MQ=255)
             cacaTTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGc                                                                                                                     <  2:618658/140‑1 (MQ=255)
                 tttGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTAc                                                                                                                 <  1:561231/140‑1 (MQ=255)
                  ttGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACt                                                                                                                >  2:222438/1‑140 (MQ=255)
                  ttGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACt                                                                                                                <  2:881430/140‑1 (MQ=255)
                  ttGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACt                                                                                                                >  2:597568/1‑140 (MQ=255)
                   tGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTg                                                                                                               >  2:715909/1‑140 (MQ=255)
                   tGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTg                                                                                                               >  2:48536/1‑140 (MQ=255)
                     tCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACAt                                                                                                                          <  1:236564/127‑1 (MQ=255)
                     tCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACAt                                                                                                                          >  2:236564/1‑127 (MQ=255)
                        aTTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCAcc                                                                                                          <  2:811005/140‑1 (MQ=255)
                          tGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAg                                                                                                        >  2:925445/1‑140 (MQ=255)
                             tACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGt                                                                                                     <  1:925445/140‑1 (MQ=255)
                                gTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                                                  <  2:894530/140‑1 (MQ=255)
                                    aCCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACa                                                                                              >  1:960955/1‑140 (MQ=255)
                                    aCCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACa                                                                                              >  2:747116/1‑140 (MQ=255)
                                    aCCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACa                                                                                              >  2:166840/1‑140 (MQ=255)
                                    aCCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACa                                                                                              >  2:937898/1‑140 (MQ=255)
                                     cccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACaa                                                                                             <  1:166840/140‑1 (MQ=255)
                                     cccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACaa                                                                                             <  1:222438/140‑1 (MQ=255)
                                      ccAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAAt                                                                                            >  2:733769/1‑140 (MQ=255)
                                         gggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAGCAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGGCACATAAACAGCGCGCCAAACATAATGCCTTCTGTCACCAGGGTGaa                                                                                                  <  2:215136/131‑1 (MQ=255)
                                         gggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                                                  >  1:215136/1‑131 (MQ=255)
                                         gggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACt                                                                                         <  1:496672/140‑1 (MQ=255)
                                         gggCGTGCAGAACATAATATCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACt                                                                                         >  1:981398/1‑140 (MQ=255)
                                          ggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                                                  <  2:883207/130‑1 (MQ=255)
                                          ggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                                                  >  1:883207/1‑130 (MQ=255)
                                          ggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTg                                                                                        <  2:960955/140‑1 (MQ=255)
                                          ggCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTg                                                                                        >  2:747827/1‑140 (MQ=255)
                                            cGTGCAGAACATAATATCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgta                                                                                      <  2:981398/140‑1 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                                                >  1:131970/1‑128 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                                                <  2:44784/128‑1 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                                                >  1:44784/1‑128 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaaaa                                                                                                <  2:131970/128‑1 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                                                  >  2:6332/1‑126 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGaa                                                                                                  <  1:6332/126‑1 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagc                                                                                    >  2:809018/1‑140 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagc                                                                                    >  1:38351/1‑140 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagc                                                                                    >  2:28737/1‑140 (MQ=255)
                                              tGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagc                                                                                    >  1:57994/1‑140 (MQ=255)
                                               gCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTgtagcg                                                                                   >  2:693144/1‑140 (MQ=255)
                                                     cATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCtt                                                                             >  2:317212/1‑140 (MQ=255)
                                                      aTAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCttt                                                                            <  2:629100/140‑1 (MQ=255)
                                                             cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                                                     >  2:110992/1‑140 (MQ=255)
                                                             cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                                                     <  2:38351/140‑1 (MQ=255)
                                                             cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                                                     <  1:28737/140‑1 (MQ=255)
                                                             cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                                                     >  1:382518/1‑140 (MQ=255)
                                                               ttattaGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATc                                                                   >  2:247874/1‑140 (MQ=255)
                                                                       tACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCaatgaatg                                                           <  1:48536/140‑1 (MQ=255)
                                                                        aCGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGc                                                          >  2:808683/1‑140 (MQ=255)
                                                                           gTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                                                     <  2:861273/126‑1 (MQ=255)
                                                                           gTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGACAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCa                                                                     >  1:861273/1‑126 (MQ=255)
                                                                            tttGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAgcg                                                      <  1:747116/140‑1 (MQ=255)
                                                                            tttGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAgcg                                                      <  1:733769/140‑1 (MQ=255)
                                                                            tttGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAgcg                                                      <  1:937898/140‑1 (MQ=255)
                                                                            tttGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAgcg                                                      <  1:715909/140‑1 (MQ=255)
                                                                            tttGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAgcg                                                      >  1:319799/1‑140 (MQ=255)
                                                                                 aTTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATc                                                 <  2:671372/140‑1 (MQ=255)
                                                                                      gAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCccac                                            >  1:778384/1‑140 (MQ=255)
                                                                                      gAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCccac                                            <  1:693144/140‑1 (MQ=255)
                                                                                            aggagACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTAc                                      >  2:850160/1‑140 (MQ=255)
                                                                                            aggagACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTAc                                      >  2:807225/1‑140 (MQ=255)
                                                                                             ggagACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTa                                       <  1:494653/138‑1 (MQ=255)
                                                                                             ggagACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTa                                       >  2:494653/1‑138 (MQ=255)
                                                                                              gagaCGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACcg                                    <  1:211861/140‑1 (MQ=255)
                                                                                                 aCGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGa                                 >  1:976927/1‑140 (MQ=255)
                                                                                                   gggAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACg                               <  2:57994/140‑1 (MQ=255)
                                                                                                   gggAAAGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAACGCAATCCCCACCACTACCGCGACg                               >  2:675521/1‑140 (MQ=255)
                                                                                                      aaaGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGc                            >  1:978323/1‑140 (MQ=255)
                                                                                                        aGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCAt                          <  1:597568/140‑1 (MQ=255)
                                                                                                        aGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCAt                          <  1:807225/140‑1 (MQ=255)
                                                                                                        aGTACAAATTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCAt                          <  1:850160/140‑1 (MQ=255)
                                                                                                               aTTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGcc                   >  2:456360/1‑140 (MQ=255)
                                                                                                               aTTAGCCCAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGcc                   <  1:110992/140‑1 (MQ=255)
                                                                                                                    cccAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCagaaa              >  2:166513/1‑140 (MQ=255)
                                                                                                                    cccAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCagaaa              >  1:249927/1‑140 (MQ=255)
                                                                                                                    cccAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCagaaa              >  1:66450/1‑140 (MQ=255)
                                                                                                                      cAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCagaaaga            <  2:678491/140‑1 (MQ=255)
                                                                                                                      cAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCagaaaga            <  1:247874/140‑1 (MQ=255)
                                                                                                                      cAGTAGCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCagaaaga            <  2:978323/140‑1 (MQ=255)
                                                                                                                           gCCACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGc       <  2:249927/140‑1 (MQ=255)
                                                                                                                            ccACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGcc      <  2:873720/140‑1 (MQ=255)
                                                                                                                            ccACATAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGcc      <  2:687554/140‑1 (MQ=255)
                                                                                                                                aTAAACAGCGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGgt  >  2:281256/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                   
CGGGCAAATGTACCACATTTGTCCATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGT  >  NC_000913/2872902‑2873169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A