Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F30 I1 R1 19 87.4 2945396 99.2% 2921832 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,600,177 C→A P91Q (CCA→CAA)  gcvR → putative transcriptional regulator GcvR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,600,1770CA98.9% 313.3 / ‑4.1 89P91Q (CCA→CAA) gcvRputative transcriptional regulator GcvR
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base A (41/47);  total (41/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GAAGAGTTCACGTTTATTATGCTGCTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCCAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCAACCTGCTGAAA  >  NC_000913/2600041‑2600308
                                                                                                                                        |                                                                                                                                   
gaagaGTTCACGTTTATTATGCTGCTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAAt                                                                                                                                  <  1:930049/140‑1 (MQ=255)
  agagTTCACGTTTATTATGCTGCTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGc                                                                                                                                >  2:1162195/1‑140 (MQ=255)
  agagTTCACGTTTATTATGCTGCTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGc                                                                                                                                <  2:1331838/140‑1 (MQ=255)
       tCACGTTTATTATGCTGCTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCa                                                                                                                           >  1:619781/1‑140 (MQ=255)
                  atGCTGCTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGt                                                                                                                <  2:1325561/140‑1 (MQ=255)
                   tgctgcTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGtt                                                                                                               <  2:954410/140‑1 (MQ=255)
                     ctgctTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCa                                                                                                             >  1:996788/1‑140 (MQ=255)
                     ctgctTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCa                                                                                                             >  1:1400976/1‑140 (MQ=255)
                        ctTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGt                                                                                                          >  2:890060/1‑140 (MQ=255)
                        ctTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGt                                                                                                          >  2:80875/1‑140 (MQ=255)
                         tttCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTc                                                                                                         >  1:1395825/1‑140 (MQ=255)
                         tttCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTc                                                                                                         >  1:277058/1‑140 (MQ=255)
                           tCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGa                                                                                                       >  1:456679/1‑140 (MQ=255)
                            ccGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGAt                                                                                                      <  1:80875/140‑1 (MQ=255)
                            ccGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGAt                                                                                                      <  1:673067/140‑1 (MQ=255)
                            ccGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGAt                                                                                                      <  1:872728/140‑1 (MQ=255)
                            ccGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGAt                                                                                                      <  1:1399563/140‑1 (MQ=255)
                                ttCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTgg                                                                                                  >  2:842415/1‑140 (MQ=255)
                                  cATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCa                                                                                                >  2:625721/1‑140 (MQ=255)
                                   aTGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAg                                                                                               <  2:619781/140‑1 (MQ=255)
                                         tGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCa                                                                                                <  2:1213615/133‑1 (MQ=255)
                                         tGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCa                                                                                                >  1:1213615/1‑133 (MQ=255)
                                         tGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTccc                                                                                         >  1:388328/1‑140 (MQ=255)
                                          gCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGTGTCCGCGTCCGCCAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGTCTcccc                                                                                        <  2:622520/140‑1 (MQ=255)
                                          gCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTcccc                                                                                        <  1:625721/140‑1 (MQ=255)
                                          gCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTcccc                                                                                        <  2:277058/140‑1 (MQ=255)
                                          gCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTcccc                                                                                        <  2:1395825/140‑1 (MQ=255)
                                          gCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGACTGGGTTCAGGTCGATGTGGCAGACTcccc                                                                                        <  1:286725/140‑1 (MQ=255)
                                           ccATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCg                                                                                       >  2:367757/1‑140 (MQ=255)
                                           ccATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCg                                                                                       <  1:1443686/140‑1 (MQ=255)
                                            cATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCa                                                                                                <  2:74803/130‑1 (MQ=255)
                                            cATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCa                                                                                                >  1:74803/1‑130 (MQ=255)
                                             aTTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCa                                                                                     <  1:83257/140‑1 (MQ=255)
                                               tACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCAtt                                                                                   >  2:606647/1‑140 (MQ=255)
                                                    tGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAAtt                                                                              <  1:1396059/140‑1 (MQ=255)
                                                      aTTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGa                                                                            >  2:899653/1‑140 (MQ=255)
                                                      aTTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGa                                                                            >  1:1089617/1‑140 (MQ=255)
                                                      aTTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGa                                                                            >  1:1048478/1‑140 (MQ=255)
                                                      aTTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGa                                                                            >  1:1464134/1‑140 (MQ=255)
                                                       ttGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGaa                                                                           <  1:890060/140‑1 (MQ=255)
                                                        tGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAAc                                                                          >  1:582507/1‑140 (MQ=255)
                                                         gAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACg                                                                         <  2:1400976/140‑1 (MQ=255)
                                                           aTCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCt                                                                       >  2:785358/1‑140 (MQ=255)
                                                           aTCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCt                                                                       >  1:1405306/1‑140 (MQ=255)
                                                              aaCGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTca                                                                    <  2:1464134/140‑1 (MQ=255)
                                                                cGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTcaca                                                                  <  1:592124/140‑1 (MQ=255)
                                                                cGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTcaca                                                                  >  1:98288/1‑140 (MQ=255)
                                                                  ttACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGc                                                                <  2:456679/140‑1 (MQ=255)
                                                                       gTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACttt                                                           >  1:88681/1‑140 (MQ=255)
                                                                        ttGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACtttt                                                          <  2:1382379/140‑1 (MQ=255)
                                                                         tGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTc                                                         >  1:860841/1‑140 (MQ=255)
                                                                             aGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGAcg                                                     <  2:1339914/140‑1 (MQ=255)
                                                                             aGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGAcg                                                     >  1:93146/1‑140 (MQ=255)
                                                                             aGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGAcg                                                     <  2:98288/140‑1 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  <  2:643799/140‑1 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  >  1:1223710/1‑140 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  <  2:996788/140‑1 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  <  1:842415/140‑1 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  <  2:1048478/140‑1 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  <  2:1173303/140‑1 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  <  2:1223710/140‑1 (MQ=255)
                                                                                tGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  >  1:643799/1‑140 (MQ=255)
                                                                                  ccGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGcat                                                <  2:347129/140‑1 (MQ=255)
                                                                                  ccGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGcat                                                <  1:1114143/140‑1 (MQ=255)
                                                                                     aaCTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGcatcat                                             <  2:23730/140‑1 (MQ=255)
                                                                                     aaCTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCCCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  <  2:1469153/135‑1 (MQ=255)
                                                                                     aaCTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCCCATTTAATTGAACGCTTCACAGCACTTTTCGACgcgc                                                  >  1:1469153/1‑135 (MQ=255)
                                                                                          gATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGaa                                        <  2:93146/140‑1 (MQ=255)
                                                                                            tCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACa                                      <  1:367757/140‑1 (MQ=255)
                                                                                            tCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACa                                      <  1:1391143/140‑1 (MQ=255)
                                                                                               tttAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTg                                   >  1:360157/1‑140 (MQ=255)
                                                                                                 tAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCg                                 >  2:853484/1‑140 (MQ=255)
                                                                                                    tCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAg                              <  1:511621/140‑1 (MQ=255)
                                                                                                      gTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCt                            <  1:1355335/140‑1 (MQ=255)
                                                                                                       tgatgaAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTg                           <  2:88681/140‑1 (MQ=255)
                                                                                                        gatgaAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTgg                          >  1:1469621/1‑140 (MQ=255)
                                                                                                         atgaAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGgt                         <  1:1162195/140‑1 (MQ=255)
                                                                                                         atgaAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGgt                         >  2:324583/1‑140 (MQ=255)
                                                                                                         atgaAGCGCACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGgt                         >  1:340991/1‑140 (MQ=255)
                                                                                                               cgcACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTcgcg                   >  2:130753/1‑140 (MQ=255)
                                                                                                                 cACGACGGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGcgca                 >  1:231732/1‑140 (MQ=255)
                                                                                                                   cgacgGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGcgcacg               >  2:393254/1‑140 (MQ=255)
                                                                                                                   cgacgGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGcgcacg               <  1:899653/140‑1 (MQ=255)
                                                                                                                      cgGCGCGTCCGCGTCCGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCaa            >  2:1113022/1‑140 (MQ=255)
                                                                                                                          gcgtccgcgtccGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCaa            <  2:546665/136‑1 (MQ=255)
                                                                                                                          gcgtccgcgtccGCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCaa            >  1:546665/1‑136 (MQ=255)
                                                                                                                           cgtccgcgtccgCAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCAACctgc       >  2:356500/1‑140 (MQ=255)
                                                                                                                             tccgcgtccgcAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCAACctgctg     <  1:1428246/140‑1 (MQ=255)
                                                                                                                                gcgtccgcAAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCAACCTGCTGaaa  <  1:1113022/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                   
GAAGAGTTCACGTTTATTATGCTGCTTTCCGGTTCATGGAATGCCATTACTCTGATTGAATCAACGTTACCGTTGAAAGGTGCCGAACTGGATCTTTTAATCGTGATGAAGCGCACGACGGCGCGTCCGCGTCCGCCAATGCCAGCATCTGTCTGGGTTCAGGTCGATGTGGCAGACTCCCCGCATTTAATTGAACGCTTCACAGCACTTTTCGACGCGCATCATATGAACATTGCGGAGCTGGTGTCGCGCACGCAACCTGCTGAAA  >  NC_000913/2600041‑2600308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A