Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F30 I1 R1
|
29 |
21.9 |
747794 |
99.4% |
743307 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,771,942 |
G→T |
S71S (TCC→TCA) |
yfjU ← |
CP4‑57 prophage; ArsC family protein YfjU |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,771,942 | 0 | G | T | 100.0%
| 78.5
/ NA
| 23 | S71S (TCC→TCA) | yfjU | CP4‑57 prophage; ArsC family protein YfjU |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (12/11); total (12/11) |
TTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGG > NC_000913/2771814‑2772070
|
ttGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAaggcagg < 2:81582/140‑1 (MQ=255)
aaGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAACACTGCGGATATCAGCATGGCCAATCACATTCAATGACAAGGCAGGCATCAgg < 2:7349/140‑1 (MQ=255)
ggTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACAtt > 2:113340/1‑140 (MQ=255)
gTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTg < 1:269793/140‑1 (MQ=255)
aTCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATg > 2:196058/1‑140 (MQ=255)
aTCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATg > 1:222887/1‑140 (MQ=255)
tCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGc > 1:70319/1‑140 (MQ=255)
ccATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTc > 1:87037/1‑140 (MQ=255)
ttCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCgat > 1:168950/1‑140 (MQ=255)
aCCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCa < 1:228860/140‑1 (MQ=255)
ggACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATc < 1:231403/140‑1 (MQ=255)
ggACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATc > 2:138359/1‑140 (MQ=255)
tatGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGt < 1:317779/140‑1 (MQ=255)
tatGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGt < 1:138359/140‑1 (MQ=255)
tgaatgaaTACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCg < 1:154070/140‑1 (MQ=255)
aatgaatACTGCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGt < 1:113340/140‑1 (MQ=255)
gCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCga > 1:94630/1‑140 (MQ=255)
gCGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCga > 1:245034/1‑140 (MQ=255)
cGGATATCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCgag > 2:46703/1‑140 (MQ=255)
atatCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGAta > 1:150703/1‑140 (MQ=255)
tCAACATGGCCAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGAtaatt < 2:70319/140‑1 (MQ=255)
ccAATCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGt > 1:24586/1‑140 (MQ=255)
aTCACATTCAATGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCgg < 2:168950/140‑1 (MQ=255)
|
TTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGG > NC_000913/2771814‑2772070
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
