Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F30 I1 R1 20 70.7 2392400 99.2% 2373260 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,565,138 G→T P238Q (CCG→CAG)  yjiM ← putative dehydratase subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,565,1380GT100.0% 232.1 / NA 67P238Q (CCG→CAG) yjiMputative dehydratase subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (28/39);  total (28/39)

GCTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCGGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAGAATGTCGCTGCCGCTA  >  NC_000913/4565010‑4565269
                                                                                                                                |                                                                                                                                   
gCTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGc                                                                                                                          <  2:245541/140‑1 (MQ=255)
 cTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCt                                                                                                                         >  1:957868/1‑140 (MQ=255)
  tCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTg                                                                                                                        <  2:1006692/140‑1 (MQ=255)
  tCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCCTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTg                                                                                                                        <  1:798012/140‑1 (MQ=255)
    ggTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGc                                                                                                                      <  1:1061318/140‑1 (MQ=255)
      tCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCct                                                                                                                    >  2:272443/1‑140 (MQ=255)
      tCGCTTTCGCCACGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCct                                                                                                                    >  2:989203/1‑140 (MQ=255)
       cGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCctt                                                                                                                   >  2:164698/1‑140 (MQ=255)
         cTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGTTTAAAATGCGCGGACGCTGGTCCAGCCGCTGCCctttt                                                                                                                 >  2:115209/1‑138 (MQ=255)
         cTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCcttct                                                                                                                 <  1:590380/140‑1 (MQ=255)
         cTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCcttct                                                                                                                 >  2:1097379/1‑140 (MQ=255)
              gCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCa                                                                                                            <  1:272443/140‑1 (MQ=255)
                    gTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCActgctg                                                                                                      >  1:440570/1‑140 (MQ=255)
                       cAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACg                                                                                                   <  1:143960/140‑1 (MQ=255)
                            ttCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAAcgc                                                                                              >  2:454685/1‑140 (MQ=255)
                             tCATAACCGCCAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAAcgcg                                                                                             <  1:115209/140‑1 (MQ=255)
                             tCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAAcgcg                                                                                             <  1:470905/140‑1 (MQ=255)
                             tCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAAcgcg                                                                                             <  2:957868/140‑1 (MQ=255)
                               aTAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACgcggg                                                                                           <  2:1109516/140‑1 (MQ=255)
                                  aCCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACgcgggcgg                                                                                        <  1:800185/140‑1 (MQ=255)
                                   ccGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGt                                                                                       >  1:506936/1‑140 (MQ=255)
                                      aCAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCAt                                                                                    >  1:82492/1‑140 (MQ=255)
                                      aCAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCAt                                                                                    >  2:1134815/1‑140 (MQ=255)
                                         aCCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGc                                                                                 >  2:7064/1‑140 (MQ=255)
                                          cccAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCa                                                                                >  2:359737/1‑140 (MQ=255)
                                            cAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATc                                                                              <  1:359737/140‑1 (MQ=255)
                                            cAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATc                                                                              <  2:359802/140‑1 (MQ=255)
                                             aGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCAtt                                                                                   <  1:629892/134‑1 (MQ=255)
                                             aGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCAtt                                                                                   >  2:629892/1‑134 (MQ=255)
                                             aGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATcc                                                                             <  1:1087997/140‑1 (MQ=255)
                                              gccgccATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCa                                                                            <  1:978785/140‑1 (MQ=255)
                                              gccgccATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCa                                                                            <  2:82492/140‑1 (MQ=255)
                                              gccgccATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCa                                                                            <  2:838025/140‑1 (MQ=255)
                                                   cATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCa                                                                       <  2:506936/140‑1 (MQ=255)
                                                    aTTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCAt                                                                      >  1:149731/1‑140 (MQ=255)
                                                            cAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAAc                                                              <  1:164698/140‑1 (MQ=255)
                                                             agtCGCGCGCACCGCTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACg                                                             >  2:876955/3‑140 (MQ=255)
                                                             aaTCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACg                                                             <  1:233452/140‑1 (MQ=255)
                                                                cgcgcgCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCct                                                          >  1:838504/1‑140 (MQ=255)
                                                                  cgcgcACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCctct                                                        >  1:751864/1‑140 (MQ=255)
                                                                  cgcgcACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCctct                                                        >  2:769215/1‑140 (MQ=255)
                                                                    cgcACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCttt                                                      >  1:761230/1‑140 (MQ=255)
                                                                        ccacTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCg                                                  <  2:345445/140‑1 (MQ=255)
                                                                        ccacTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCg                                                  <  2:761230/140‑1 (MQ=255)
                                                                        ccacTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCg                                                  <  1:454685/140‑1 (MQ=255)
                                                                               ttCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGa                                           <  2:751864/140‑1 (MQ=255)
                                                                                 ctgctgCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAg                                         >  2:466518/1‑140 (MQ=255)
                                                                                    ctgcGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGtt                                      <  2:724730/140‑1 (MQ=255)
                                                                                     tgcGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTg                                     <  1:989203/140‑1 (MQ=255)
                                                                                     tgcGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTg                                     <  1:466518/140‑1 (MQ=255)
                                                                                     tgcGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTg                                     <  1:499542/140‑1 (MQ=255)
                                                                                     tgcGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTg                                     >  1:511831/1‑140 (MQ=255)
                                                                                      gcgcCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCg                                                  <  2:148030/126‑1 (MQ=255)
                                                                                      gcgcCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCg                                                  >  1:148030/1‑126 (MQ=255)
                                                                                        gccgccAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTgcgc                                  <  2:149731/140‑1 (MQ=255)
                                                                                              aaTCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCGCTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTaaa                            <  2:136059/140‑1 (MQ=255)
                                                                                               aTCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAAc                           <  2:440570/140‑1 (MQ=255)
                                                                                               aTCGGGCAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAAc                           <  2:838504/140‑1 (MQ=255)
                                                                                                     cAGCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACttt                     <  2:511831/140‑1 (MQ=255)
                                                                                                       gCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATc                                                                              <  1:11172/81‑1 (MQ=255)
                                                                                                       gCCGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATc                                                                              >  2:11172/1‑81 (MQ=255)
                                                                                                        ccGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTgcg                                   >  2:1185331/1‑123 (MQ=255)
                                                                                                        ccGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTgcg                                   <  1:1185331/123‑1 (MQ=255)
                                                                                                        ccGGTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAg                  >  2:420135/1‑140 (MQ=255)
                                                                                                           gTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAGAAt               >  2:538598/1‑140 (MQ=255)
                                                                                                           gTGATTAAAATGCGCGGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAGAAt               >  1:787252/1‑140 (MQ=255)
                                                                                                                       cgcgGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAGAATGTCGCTGCCGCt   <  2:343239/140‑1 (MQ=255)
                                                                                                                        gcgGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAGAATGTCGCTGCCGCTa  >  2:662008/1‑140 (MQ=255)
                                                                                                                        gcgGACGCTGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAGAATGTCGCTGCCGCTa  >  2:335026/1‑140 (MQ=255)
                                                                                                                                |                                                                                                                                   
GCTCGGTCGCTTTCGCCCCGGTGCAGTTTTCATAACCGACAACCCAGCCGCCATTCTCTTCAATCGCGCGCACCACTTTTTCTGCTGCGCCGCCAATCGGGCAGCCGGTGATTAAAATGCGCGGACGCGGGTCCAGTCGCTGGCCTTCTTCCCACTGCTGACGAACGCGGGCGGTCATTGCATCCAGTTCATTGATCAACGCCTCTTTATCGAACCGGAAGGTTGCGCCGTAAACCACTTTCAGAATGTCGCTGCCGCTA  >  NC_000913/4565010‑4565269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A