Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A39 F30 I1 R1
|
22 |
89.0 |
3054638 |
99.3% |
3033255 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,495,519 |
G→T |
Q231K (CAG→AAG) |
ahr ← |
aldehyde reductase, NADPH‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,495,519 | 0 | G | T | 95.7%
| 154.4
/ ‑3.3
| 47 | Q231K (CAG→AAG) | ahr | aldehyde reductase, NADPH‑dependent |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (42/3); minor base C (0/2); total (42/5) |
| Fisher's exact test for biased strand distribution p-value = 9.25e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACAGCGGCGTGAGAACCGCACCGACCGTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTGCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTT > NC_000913/4495405‑4495654
|
acagCGGCGTGAGAACCGCACCGACCGTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGc > 2:915910/1‑140 (MQ=255)
acagCGGCGTGAGAACCGCACCGACCGTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGc > 1:684315/1‑140 (MQ=255)
cggcgTGAGAACCGCACCGACCGTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGAt > 2:344572/1‑140 (MQ=255)
cgTGAGAACCGCACCGACCGTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATcgc > 2:760284/1‑140 (MQ=255)
ccgaccgTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTcaccac > 1:489877/1‑140 (MQ=255)
cccgttaggAAATTCCCCGCAATGGGTCAGCGCCTAAAAATAGGGCTGCCAGTCGAGGCTGACGTTGAGGGTGTTGAAAAGGAGACCAACCTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACtt < 2:173910/133‑1 (MQ=255)
accgTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACttt > 1:676888/1‑140 (MQ=255)
aaaatccccGCCATGGGTGAGCGCCTAAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTTTTGAAAATGAAATCAAACTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCAc < 2:957816/133‑1 (MQ=255)
ccGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGc > 2:1185982/1‑140 (MQ=255)
ccATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGccgg > 1:1503680/1‑138 (MQ=255)
ccATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAg > 1:487702/1‑140 (MQ=255)
cATAGGTCGGCGCCTAAAAATAGGCCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAACCTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGc < 2:684315/140‑1 (MQ=255)
cgcCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGct > 1:261904/1‑140 (MQ=255)
cgcCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGct > 1:1078706/1‑140 (MQ=255)
cgcCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGct > 1:274622/1‑140 (MQ=255)
cgcCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGct > 1:537202/1‑140 (MQ=255)
cgcCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGct > 2:1092952/1‑140 (MQ=255)
cgcCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGct > 2:1314779/1‑140 (MQ=255)
cgcCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGct > 1:1195264/1‑140 (MQ=255)
tCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCtctgtctc > 1:1526715/1‑133 (MQ=255)
cAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTc > 1:1079866/1‑140 (MQ=255)
aaaTGGGGCTGCCAGTGGGGGCTGACTTTGGGGGTGTTGATAATGAAATCAACCTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGc < 2:777/140‑1 (MQ=255)
aaaTGGGGCTGCCAGTCGGGGCTGGCGTTGAGGGTTTTGATAATGAGATAAACCTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGc < 2:603722/140‑1 (MQ=255)
aaaTGGGGCTGCCAGTCGAGGCGGACGTTGAGGGTGTTGATAAGGAGATCAACCTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGc < 2:1195264/140‑1 (MQ=255)
aaaTAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGc < 1:915910/140‑1 (MQ=255)
aGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGa < 1:1185982/140‑1 (MQ=255)
ggCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGAtt > 1:777/1‑140 (MQ=255)
cTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAg > 2:703231/1‑140 (MQ=255)
cTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAg > 1:581012/1‑140 (MQ=255)
cTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAg > 1:603722/1‑140 (MQ=255)
ccAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAAc > 2:438093/1‑140 (MQ=255)
cAGTCGGGGCTGACGTTGCGGGTTTTAATAATGAAATAAACCTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACt < 1:760284/140‑1 (MQ=255)
cGTTGGGGGTGTTGATAATGAGATCAAACTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCAcc < 2:1078706/140‑1 (MQ=255)
cGTTGACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCAcc > 2:116673/1‑140 (MQ=255)
ttGACGGTGTTGATAATGAGATCAAACTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTc < 1:116673/140‑1 (MQ=255)
gACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGc > 1:433414/1‑140 (MQ=255)
gACGGTGTTGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGc < 2:489877/140‑1 (MQ=255)
gtTAATAATGAAACCAACCTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCa < 1:344572/140‑1 (MQ=255)
ttGATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCAt > 1:1182424/1‑140 (MQ=255)
gATAATGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTg > 1:869247/1‑140 (MQ=255)
aaTGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGt > 1:1404077/1‑140 (MQ=255)
aTGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTg > 1:609949/1‑140 (MQ=255)
tGAGATCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGc < 1:703231/140‑1 (MQ=255)
gagaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCa > 2:1143092/1‑140 (MQ=255)
gagaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCa > 1:237080/1‑140 (MQ=255)
gagaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCa > 2:854087/1‑140 (MQ=255)
gagaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCa > 1:1009642/1‑140 (MQ=255)
agacaaaaCTCCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCGGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAg < 2:1503680/135‑1 (MQ=255)
agaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCTCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAg > 1:50514/1‑140 (MQ=255)
agaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAg > 1:1277884/1‑140 (MQ=255)
agaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAg < 1:1314779/140‑1 (MQ=255)
gaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGa > 1:653317/1‑140 (MQ=255)
gaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGa > 1:1492248/1‑140 (MQ=255)
gaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGa > 1:1391657/1‑140 (MQ=255)
gaTCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGa > 1:739333/1‑140 (MQ=255)
tCAAACTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAg > 1:1453754/1‑140 (MQ=255)
aaaCTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGtt > 1:1278834/1‑140 (MQ=255)
aaaCTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGtt < 2:433414/140‑1 (MQ=255)
aaCTTCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGttt > 1:1421734/1‑140 (MQ=255)
|
ACAGCGGCGTGAGAACCGCACCGACCGTATGGAAATTA‑CCGCCATAGGTCAGCGCCTCAAAATAGGGCTGCCAGTCGAGGCTGACGTTGACGGTGTTGATAATGAGATCAAACTGCCCCGCCAGTGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTT > NC_000913/4495405‑4495654
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
